Create a new local SQL database from downloaded files. Currently only GenBank/nucleotide/nuccore database is supported.
character, database type
Minimum sequence length, default 0.
Maximum sequence length, default NULL.
Alternative restez path if you would like to use the downloads from a different restez path.
All .seq.gz files are added to the database. A user can specify sequence limit sizes for those sequences to be added to the database – smaller databases are faster to search.
Alternatively, a user can use the
alt_restez_path to add the files
from an alternative restez file path. For example, you may wish to have a
database of all environmental sequences but then an additional smaller one of
just the sequences with lengths below 100 bp. Instead of having to download
all environmental sequences twice, you can generate multiple restez databases
using the same downloaded files from a single restez path.
This function will not overwrite a pre-existing database. Old databases must
be deleted before a new one can be created. Use
everything=FALSE to delete an SQL database.
Connections/disconnections to the database are made automatically.
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