gb_fasta_get: Get fasta from GenBank
In restez: Create and Query a Local Copy of 'GenBank' in R
Description
Usage
Arguments
Value
See Also
Examples
Description
Get sequence and definition data in FASTA format. Equivalent to
rettype='fasta' in entrez_fetch.
Usage
1
gb_fasta_get(id, width = 70)
Arguments
id
character, sequence accession ID(s)
width
integer, maximum number of characters in a line
Value
named vector of fasta sequences, if no results found NULL
See Also
Other get: gb_definition_get,
gb_organism_get,
gb_record_get,
gb_sequence_get,
gb_version_get
Examples
1
2
3
4
5
6
7
8
9
10
library(restez)
restez_path_set(filepath = tempdir())
demo_db_create(n = 5)
restez_connect()
(fasta <- gb_fasta_get(id = 'demo_1'))
(fastas <- gb_fasta_get(id = c('demo_1', 'demo_2')))
# delete demo after example
db_delete(everything = TRUE)
restez documentation built on Nov. 27, 2018, 1:05 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value See Also Examples
Description
Get sequence and definition data in FASTA format. Equivalent to
rettype='fasta' in entrez_fetch.
Usage
1 | gb_fasta_get(id, width = 70)
|
Arguments
id |
character, sequence accession ID(s) |
width |
integer, maximum number of characters in a line |
Value
named vector of fasta sequences, if no results found NULL
See Also
Other get: gb_definition_get,
gb_organism_get,
gb_record_get,
gb_sequence_get,
gb_version_get
Examples
1 2 3 4 5 6 7 8 9 10 | library(restez)
restez_path_set(filepath = tempdir())
demo_db_create(n = 5)
restez_connect()
(fasta <- gb_fasta_get(id = 'demo_1'))
(fastas <- gb_fasta_get(id = c('demo_1', 'demo_2')))
# delete demo after example
db_delete(everything = TRUE)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.