API for rgenie
Analysis of GenIE Experiments
| Global functions | |
|---|---|
| allele_effect_plot | Man page Source code |
| bind_results | Man page Source code |
| calc_power | Source code |
| check_del_opts | Source code |
| check_is_del_result | Source code |
| check_is_grep_result | Source code |
| check_main_opts | Source code |
| check_regions_and_replicates | Source code |
| del_profile_internal | Source code |
| deletion_alleles_plot | Man page Source code |
| deletion_analysis | Man page Source code |
| deletion_plots | Man page Source code |
| deletion_profile_plot | Man page Source code |
| deletion_summary_plot | Man page Source code |
| download_example | Man page Source code |
| experiment_summary_plot | Man page Source code |
| fit_UDP_CV | Source code |
| fit_variance_components | Source code |
| genie_plot_options | Man page Source code |
| get_aligned_reads | Source code |
| get_hdr_profiles | Source code |
| get_mismatch_chars_count | Source code |
| get_mismatch_count | Source code |
| get_read_chars_mismatch_profile | Source code |
| get_read_chars_udp | Source code |
| get_read_site_profile | Source code |
| get_read_udp | Source code |
| get_region_del_stats | Source code |
| get_region_reads_from_bam | Source code |
| get_udp_stats | Source code |
| get_uns_data | Source code |
| get_variance_components | Man page Source code |
| grep_analysis | Man page Source code |
| grep_summary_plot | Man page Source code |
| is_dna_letter | Source code |
| is_empty | Source code |
| mul1_del_results | Man page |
| mul1_grep_results | Man page |
| mul1_regions | Man page |
| mul1_replicates | Man page |
| output | Source code |
| parse_cigar | Source code |
| power_analysis | Man page Source code |
| power_plots | Man page Source code |
| print_list | Source code |
| ratio_uncertainty_sd | Source code |
| region_del_analysis | Source code |
| region_grep_analysis | Source code |
| register_read | Source code |
| replicate_del_analysis | Source code |
| replicate_grep_analysis | Source code |
| replicate_qc_metrics | Source code |
| replicate_qc_plot | Man page Source code |
| replicate_summary_plot | Man page Source code |
| rgenie | Man page |
| str_to_chars | Source code |
| text_plot | Source code |
| udp_plot | Source code |
| udp_ratio_estimate | Source code |
| udp_ratio_estimate_welch | Source code |
| udp_to_binary | Source code |
| variance_components_plot | Man page Source code |
| variance_partition_plot | Source code |
| variance_partition_summary_table | Source code |
| welch_df_estimate | Source code |
