allele_effect_plot: Plots estimated effect sizes and confidence intervals for top...
In rgenie: Analysis of GenIE Experiments
Description
Usage
Arguments
Value
See Also
Examples
Description
Plots estimated effect sizes and confidence intervals for top alleles from a deletion analysis.
Usage
1
allele_effect_plot(del_result, viewing_window = 40, max_alleles = 40)
Arguments
del_result
Result from a call to deletion_analysis.
viewing_window
Window on either size of the CRISPR cut site to show in the plot.
max_alleles
The maximum number of alleles to show in the plot.
Value
Returns a ggplot object plotting effect sizes and confidence intervals for top alleles
from a deletion analysis.
Top alleles are in decreasing order of their total read count in gDNA across replicates.
See Also
Examples
1
2
3
4
# Note: First run deletion_analysis()
# mul1_del_results is a pre-loaded result
allele_effect_plot(mul1_del_results[[1]])
rgenie documentation built on Oct. 23, 2020, 8:21 p.m.
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Description Usage Arguments Value See Also Examples
Description
Plots estimated effect sizes and confidence intervals for top alleles from a deletion analysis.
Usage
1 | allele_effect_plot(del_result, viewing_window = 40, max_alleles = 40)
|
Arguments
del_result |
Result from a call to deletion_analysis. |
viewing_window |
Window on either size of the CRISPR cut site to show in the plot. |
max_alleles |
The maximum number of alleles to show in the plot. |
Value
Returns a ggplot object plotting effect sizes and confidence intervals for top alleles from a deletion analysis. Top alleles are in decreasing order of their total read count in gDNA across replicates.
See Also
Examples
1 2 3 4 | # Note: First run deletion_analysis()
# mul1_del_results is a pre-loaded result
allele_effect_plot(mul1_del_results[[1]])
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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