download_example: Downloads example data for rgenie.
In rgenie: Analysis of GenIE Experiments

Description Usage Arguments Value See Also Examples

The example data is a set of BAM files for GenIE replicates.

1	download_example(dir, name = "MUL1", overwrite = FALSE, quiet = FALSE)

`dir`	Directory where example data should be put.
`name`	The name of the example to download.
`overwrite`	If FALSE, then data are not downloaded if directory 'dir/name' already exists. Otherwise, all data are downloaded (possibly overwriting files).
`quiet`	If TRUE, then no messages are printing during the analysis.

Returns a list containing the same tables as in an individual result, but concatenated across regions.

grep_analysis

deletion_analysis

download_example(dir = "~/genie_example", name = "MUL1")
# Data are downloaded and we can run an rgenie analysis
setwd("~/genie_example/MUL1/")
regions = readr::read_tsv("mul1.genie_regions.tsv")
replicates = readr::read_tsv("mul1.genie_replicates.tsv")
grep_results = grep_analysis(regions, replicates)