taxon_separate_dark_taxa_using_genbank: Separate dark from known taxa on another database

In rphylotastic: Interface to 'Phylotastic' Web Services

Description

Separate dark from known taxa on another database

Usage

taxon_separate_dark_taxa_using_genbank(taxon, filters = c("environmental",
  "sp\\.", "cf\\.", "uncultured", "unidentified", " clone", " enrichment"),
  verbose = TRUE, sleep = 0)

Arguments

taxon	A taxon to get all species for
filters	A character vector of strings to exclude
verbose	Update on how many are done
sleep	How many seconds to sleep between calls (on top of rentrez's defaults)

Value

A list containing a vector of dark names, a vector of known names, and fraction.dark

rphylotastic documentation built on March 18, 2018, 1:46 p.m.