rstanarm: Bayesian Applied Regression Modeling via Stan

Estimates pre-compiled regression models using the 'rstan' package, which provides the R interface to the Stan C++ library for Bayesian estimation. Users specify models via the customary R syntax with a formula and data.frame plus some additional arguments for priors.

AuthorJonah Gabry [aut], Trustees of Columbia University [cph], R Core Deveopment Team [cph] (R/stan_aov.R), Douglas Bates [cph] (R/pp_data.R), Martin Maechler [cph] (R/pp_data.R), Ben Bolker [cph] (R/pp_data.R), Steve Walker [cph] (R/pp_data.R), Brian Ripley [cph] (R/stan_aov.R, R/stan_polr.R), William Venables [cph] (R/stan_polr.R), Ben Goodrich [cre, aut]
Date of publication2017-01-17 08:36:39
MaintainerBen Goodrich <benjamin.goodrich@columbia.edu>
LicenseGPL (>= 3)
Version2.14.1
https://groups.google.com/forum/#!forum/stan-users, http://mc-stan.org/

View on CRAN

Man pages

adapt_delta: Target average acceptance probability

as.matrix.stanreg: Extract the posterior sample

example_model: Example model

family.stanreg: family method for stanreg objects

formula.stanreg: formula method for stanreg objects

get_y: Extract X, Y or Z from a stanreg object

log_lik.stanreg: Pointwise log-likelihood matrix

loo.stanreg: Leave-one-out (LOO) and K-fold cross-validation

model.frame.stanreg: model.frame method for stanreg objects

model.matrix.stanreg: model.matrix method for stanreg objects

neg_binomial_2: Family function for negative binomial GLMs

pairs.stanreg: Pairs method for stanreg objects

plot.stanreg: Plot method for stanreg objects

posterior_interval.stanreg: Posterior uncertainty intervals

posterior_linpred: Posterior distribution of the linear predictor

posterior_predict.stanreg: Draw from posterior predictive distribution

posterior_vs_prior: Juxtapose prior and posterior

pp_check.stanreg: Graphical posterior predictive checks

pp_validate: Model validation via simulation

predictive_error.stanreg: In-sample or out-of-sample predictive errors

predictive_interval.stanreg: Predictive intervals

predict.stanreg: Predict method for stanreg objects

print.kfold: Print method for kfold

print.stanreg: Print method for stanreg objects

priors: Prior distributions and options

prior_summary.stanreg: Summarize the priors used for an rstanarm model

rstanarm-datasets: Datasets for rstanarm examples

rstanarm-deprecated: Deprecated functions

rstanarm-package: Applied Regression Modeling via RStan

se: Extract standard errors

shinystan: Using the ShinyStan GUI with rstanarm models

stan_betareg: Bayesian beta regression models via Stan

stan_biglm: Bayesian regularized linear but big models via Stan

stan_gamm4: Bayesian generalized linear additive models with...

stan_glm: Bayesian generalized linear models via Stan

stan_glmer: Bayesian generalized linear models with group-specific terms...

stan_lm: Bayesian regularized linear models via Stan

stan_polr: Bayesian ordinal regression models via Stan

stanreg-methods: Methods for stanreg objects

stanreg-objects: Fitted model objects

summary.stanreg: Summary method for stanreg objects

terms.stanreg: terms method for stanreg objects

Functions

adapt_delta Man page
as.array.stanreg Man page
as.data.frame.stanreg Man page
as.data.frame.summary.stanreg Man page
as.matrix.stanreg Man page
bball1970 Man page
bball2006 Man page
cauchy Man page
coef.stanreg Man page
compare_models Man page
confint.stanreg Man page
decov Man page
dirichlet Man page
example_model Man page
exponential Man page
family.stanreg Man page
fitted.stanreg Man page
fixef Man page
fixef.stanreg Man page
formula.stanreg Man page
get_x Man page
get_y Man page
get_z Man page
hs Man page
hs_plus Man page
kfold Man page
kidiq Man page
laplace Man page
lasso Man page
launch_shinystan Man page
log_lik Man page
log_lik.stanreg Man page
loo Man page
loo.stanreg Man page
model.frame.stanreg Man page
model.matrix.stanreg Man page
mortality Man page
neg_binomial_2 Man page
ngrps Man page
ngrps.stanreg Man page
nobs.stanreg Man page
normal Man page
pairs.stanreg Man page
plot_nonlinear Man page
plot.stanreg Man page
posterior_interval Man page
posterior_interval.stanreg Man page
posterior_linpred Man page
posterior_linpred.stanreg Man page
posterior_predict Man page
posterior_predict.stanreg Man page
posterior_vs_prior Man page
posterior_vs_prior.stanreg Man page
pp_check Man page
pp_check.stanreg Man page
pp_validate Man page
predictive_error Man page
predictive_error.ppd Man page
predictive_error.stanreg Man page
predictive_interval Man page
predictive_interval.ppd Man page
predictive_interval.stanreg Man page
predict.stanreg Man page
print.kfold Man page
print.stanreg Man page
print.summary.stanreg Man page
prior_options Man page
priors Man page
prior_summary Man page
prior_summary.stanreg Man page
product_normal Man page
R2 Man page
radon Man page
ranef Man page
ranef.stanreg Man page
residuals.stanreg Man page
roaches Man page
rstanarm Man page
rstanarm-datasets Man page
rstanarm-deprecated Man page
rstanarm-package Man page
se Man page
se.stanreg Man page
shinystan Man page
sigma Man page
sigma.stanreg Man page
stan_aov Man page
stan_betareg Man page
stan_betareg.fit Man page
stan_biglm Man page
stan_biglm.fit Man page
stan_gamm4 Man page
stan_glm Man page
stan_glmer Man page
stan_glmer.nb Man page
stan_glm.fit Man page
stan_glm.nb Man page
stan_lm Man page
stan_lmer Man page
stan_lm.fit Man page
stan_lm.wfit Man page
stan_polr Man page
stan_polr.fit Man page
stanreg-methods Man page
stanreg-objects Man page
student_t Man page
summary.stanreg Man page
terms.stanreg Man page
tumors Man page
update.stanreg Man page
VarCorr Man page
VarCorr.stanreg Man page
vcov.stanreg Man page
waic Man page
waic.stanreg Man page
wells Man page

Files

rstanarm
rstanarm/inst
rstanarm/inst/CITATION
rstanarm/inst/NEWS
rstanarm/inst/doc
rstanarm/inst/doc/pooling.Rmd
rstanarm/inst/doc/continuous.Rmd
rstanarm/inst/doc/binomial.html
rstanarm/inst/doc/aov.html
rstanarm/inst/doc/count.Rmd
rstanarm/inst/doc/pooling.R
rstanarm/inst/doc/count.R
rstanarm/inst/doc/glmer.R
rstanarm/inst/doc/betareg.Rmd
rstanarm/inst/doc/glmer.Rmd
rstanarm/inst/doc/polr.html
rstanarm/inst/doc/polr.Rmd
rstanarm/inst/doc/lm.R
rstanarm/inst/doc/glmer.html
rstanarm/inst/doc/rstanarm.html
rstanarm/inst/doc/lm.Rmd
rstanarm/inst/doc/rstanarm.Rmd
rstanarm/inst/doc/continuous.html
rstanarm/inst/doc/rstanarm.R
rstanarm/inst/doc/continuous.R
rstanarm/inst/doc/lm.html
rstanarm/inst/doc/binomial.Rmd
rstanarm/inst/doc/aov.R
rstanarm/inst/doc/polr.R
rstanarm/inst/doc/children
rstanarm/inst/doc/children/SETTINGS-knitr.txt
rstanarm/inst/doc/children/stan_glm_priors.txt
rstanarm/inst/doc/children/SETTINGS-rstan.txt
rstanarm/inst/doc/children/SETTINGS-loo.txt
rstanarm/inst/doc/children/four_steps.txt
rstanarm/inst/doc/children/SETTINGS-gg.txt
rstanarm/inst/doc/betareg.html
rstanarm/inst/doc/betareg.R
rstanarm/inst/doc/count.html
rstanarm/inst/doc/binomial.R
rstanarm/inst/doc/aov.Rmd
rstanarm/inst/doc/pooling.html
rstanarm/inst/chunks
rstanarm/inst/chunks/tparameters_betareg.stan
rstanarm/inst/chunks/data_glm.stan
rstanarm/inst/chunks/continuous_likelihoods.stan
rstanarm/inst/chunks/Columbia_copyright.stan
rstanarm/inst/chunks/eta_z_no_intercept.stan
rstanarm/inst/chunks/hyperparameters.stan
rstanarm/inst/chunks/tdata_glm.stan
rstanarm/inst/chunks/make_eta_bern.stan
rstanarm/inst/chunks/license.stan
rstanarm/inst/chunks/binomial_likelihoods.stan
rstanarm/inst/chunks/make_eta.stan
rstanarm/inst/chunks/common_functions.stan
rstanarm/inst/chunks/eta_no_intercept.stan
rstanarm/inst/chunks/data_betareg.stan
rstanarm/inst/chunks/count_likelihoods.stan
rstanarm/inst/chunks/parameters_betareg.stan
rstanarm/inst/chunks/priors_betareg.stan
rstanarm/inst/chunks/glmer_stuff2.stan
rstanarm/inst/chunks/eta_add_Zb.stan
rstanarm/inst/chunks/make_eta_z.stan
rstanarm/inst/chunks/tparameters_glm.stan
rstanarm/inst/chunks/glmer_stuff.stan
rstanarm/inst/chunks/parameters_glm.stan
rstanarm/inst/chunks/weights_offset.stan
rstanarm/inst/chunks/NKX.stan
rstanarm/inst/chunks/bernoulli_likelihoods.stan
rstanarm/inst/chunks/tdata_betareg.stan
rstanarm/inst/chunks/priors_glm.stan
rstanarm/exec
rstanarm/exec/binomial.stan
rstanarm/exec/lm.stan
rstanarm/exec/polr.stan
rstanarm/exec/continuous.stan
rstanarm/exec/count.stan
rstanarm/exec/bernoulli.stan
rstanarm/tests
rstanarm/tests/testthat.R
rstanarm/tests/testthat
rstanarm/tests/testthat/test_methods.R
rstanarm/tests/testthat/test_pp_check.R
rstanarm/tests/testthat/test_pp_validate.R
rstanarm/tests/testthat/test_loo.R
rstanarm/tests/testthat/test_stan_lm.R
rstanarm/tests/testthat/test_misc.R
rstanarm/tests/testthat/test_plots.R
rstanarm/tests/testthat/test_predict.R
rstanarm/tests/testthat/test_stan_betareg.R
rstanarm/tests/testthat/test_posterior_predict.R
rstanarm/tests/testthat/test_stan_glm.R
rstanarm/tests/testthat/test_stan_functions.R
rstanarm/tests/testthat/test_stan_glmer.R
rstanarm/tests/testthat/test_stan_polr.R
rstanarm/src
rstanarm/src/Makevars
rstanarm/src/Makevars.win
rstanarm/src/Modules.cpp
rstanarm/src/include
rstanarm/src/include/models.hpp
rstanarm/NAMESPACE
rstanarm/demo
rstanarm/demo/ARM_Ch03.R
rstanarm/demo/ARM_Ch08.R
rstanarm/demo/ARM_Ch09.R
rstanarm/demo/ARM_Ch05.R
rstanarm/demo/00Index
rstanarm/demo/CLEANUP.R
rstanarm/demo/ARM_Ch04.R
rstanarm/demo/SETUP.R
rstanarm/demo/ARM_Ch07.R
rstanarm/demo/ARM_Ch14.R
rstanarm/demo/ARM_Ch12_13.R
rstanarm/data
rstanarm/data/bball2006.rda
rstanarm/data/kidiq.rda
rstanarm/data/tumors.rda
rstanarm/data/wells.rda
rstanarm/data/radon.rda
rstanarm/data/mortality.rda
rstanarm/data/roaches.rda
rstanarm/data/bball1970.rda
rstanarm/R
rstanarm/R/pp_validate.R rstanarm/R/adapt_delta.R rstanarm/R/shinystan.R rstanarm/R/stan_betareg.fit.R rstanarm/R/pp_check.R rstanarm/R/posterior_interval.R rstanarm/R/gamm4_to_glmer.R rstanarm/R/prior_summary.R rstanarm/R/loo.R rstanarm/R/predictive_interval.R rstanarm/R/neg_binomial_2.R rstanarm/R/data_block.R rstanarm/R/priors.R rstanarm/R/rstanarm-deprecated.R rstanarm/R/as.matrix.stanreg.R rstanarm/R/predictive_error.R rstanarm/R/stanreg-objects.R rstanarm/R/stan_biglm.R rstanarm/R/predict.R rstanarm/R/posterior_predict.R rstanarm/R/stan_polr.fit.R rstanarm/R/stan_lm.fit.R rstanarm/R/stan_glm.R rstanarm/R/rstanarm-package.R rstanarm/R/stanmodels.R rstanarm/R/stan_gamm4.R rstanarm/R/plots.R rstanarm/R/log_lik.R rstanarm/R/stan_glmer.R rstanarm/R/pp_data.R rstanarm/R/example_model.R rstanarm/R/posterior_linpred.R rstanarm/R/stanreg-methods.R rstanarm/R/print-and-summary.R rstanarm/R/stan_polr.R rstanarm/R/stanreg.R rstanarm/R/posterior_vs_prior.R rstanarm/R/stan_glm.fit.R rstanarm/R/stan_lm.R rstanarm/R/misc.R rstanarm/R/stan_aov.R rstanarm/R/datasets.R rstanarm/R/zzz.R rstanarm/R/stan_biglm.fit.R rstanarm/R/stan_betareg.R
rstanarm/vignettes
rstanarm/vignettes/pooling.Rmd
rstanarm/vignettes/continuous.Rmd
rstanarm/vignettes/count.Rmd
rstanarm/vignettes/betareg.Rmd
rstanarm/vignettes/.install_extras
rstanarm/vignettes/glmer.Rmd
rstanarm/vignettes/polr.Rmd
rstanarm/vignettes/lm.Rmd
rstanarm/vignettes/rstanarm.Rmd
rstanarm/vignettes/binomial.Rmd
rstanarm/vignettes/children
rstanarm/vignettes/children/SETTINGS-knitr.txt
rstanarm/vignettes/children/stan_glm_priors.txt
rstanarm/vignettes/children/SETTINGS-rstan.txt
rstanarm/vignettes/children/SETTINGS-loo.txt
rstanarm/vignettes/children/four_steps.txt
rstanarm/vignettes/children/SETTINGS-gg.txt
rstanarm/vignettes/aov.Rmd
rstanarm/MD5
rstanarm/build
rstanarm/build/vignette.rds
rstanarm/DESCRIPTION
rstanarm/man
rstanarm/man/predictive_error.stanreg.Rd rstanarm/man/rstanarm-package.Rd rstanarm/man/posterior_vs_prior.Rd
rstanarm/man/figures
rstanarm/man/figures/stanlogo.png
rstanarm/man/stan_biglm.Rd rstanarm/man/rstanarm-deprecated.Rd rstanarm/man/family.stanreg.Rd rstanarm/man/posterior_linpred.Rd rstanarm/man/rstanarm-datasets.Rd rstanarm/man/predictive_interval.stanreg.Rd rstanarm/man/stan_polr.Rd rstanarm/man/predict.stanreg.Rd rstanarm/man/stan_glm.Rd rstanarm/man/summary.stanreg.Rd rstanarm/man/stan_gamm4.Rd rstanarm/man/example_model.Rd rstanarm/man/model.matrix.stanreg.Rd rstanarm/man/pp_validate.Rd rstanarm/man/log_lik.stanreg.Rd rstanarm/man/terms.stanreg.Rd rstanarm/man/as.matrix.stanreg.Rd rstanarm/man/se.Rd rstanarm/man/print.stanreg.Rd rstanarm/man/stan_lm.Rd rstanarm/man/neg_binomial_2.Rd rstanarm/man/prior_summary.stanreg.Rd rstanarm/man/loo.stanreg.Rd rstanarm/man/adapt_delta.Rd rstanarm/man/pp_check.stanreg.Rd rstanarm/man/formula.stanreg.Rd rstanarm/man/pairs.stanreg.Rd rstanarm/man/print.kfold.Rd rstanarm/man/posterior_interval.stanreg.Rd rstanarm/man/priors.Rd rstanarm/man/stan_betareg.Rd rstanarm/man/get_y.Rd rstanarm/man/stan_glmer.Rd rstanarm/man/model.frame.stanreg.Rd rstanarm/man/plot.stanreg.Rd rstanarm/man/posterior_predict.stanreg.Rd rstanarm/man/stanreg-objects.Rd rstanarm/man/shinystan.Rd rstanarm/man/stanreg-methods.Rd
rstanarm/cleanup
rstanarm/tools
rstanarm/tools/make_cpp.R
rstanarm/cleanup.win

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