rbing.Op: Simulate a 'p*p' Orthogonal Random Matrix

Description Usage Arguments Value Note Author(s) References Examples

View source: R/rbing.Op.R

Description

Simulate a p*p random orthogonal matrix from the Bingham distribution using a rejection sampler.

Usage

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rbing.Op(A, B)

Arguments

A

a symmetric matrix.

B

a diagonal matrix with decreasing entries.

Value

A random pxp orthogonal matrix simulated from the Bingham distribution.

Note

This only works for small matrices, otherwise the sampler will reject too frequently to be useful.

Author(s)

Peter Hoff

References

Hoff(2009)

Examples

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Z<-matrix(rnorm(10*5),10,5) ; A<-t(Z)%*%Z
B<-diag(sort(rexp(5),decreasing=TRUE))
U<-rbing.Op(A,B)
U<-rbing.matrix.gibbs(A,B,U)


## The function is currently defined as
function (A, B) 
{
    b <- diag(B)
    bmx <- max(b)
    bmn <- min(b)
    if(bmx>bmn)
    {
    A <- A * (bmx - bmn)
    b <- (b - bmn)/(bmx - bmn)
    vlA <- eigen(A)$val
    diag(A) <- diag(A) - vlA[1]
    vlA <- eigen(A)$val
    nu <- max(dim(A)[1] + 1, round(-vlA[length(vlA)]))
    del <- nu/2
    M <- solve(diag(del, nrow = dim(A)[1]) - A)/2
    rej <- TRUE
    cholM <- chol(M)
    nrej <- 0
    while (rej) {
        Z <- matrix(rnorm(nu * dim(M)[1]), nrow = nu, ncol = dim(M)[1])
        Y <- Z %*% cholM
        tmp <- eigen(t(Y) %*% Y)
        U <- tmp$vec %*% diag((-1)^rbinom(dim(A)[1], 1, 0.5))
        L <- diag(tmp$val)
        D <- diag(b) - L
        lrr <- sum(diag((D %*% t(U) %*% A %*% U))) - sum(-sort(diag(-D)) * 
            vlA)
        rej <- (log(runif(1)) > lrr)
        nrej <- nrej + 1
    }
    }
    if(bmx==bmn) { U<-rustiefel(dim(A)[1],dim(A)[1]) } 
    U
  }

rstiefel documentation built on May 29, 2017, 11:58 a.m.