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Identifies and scores possible Transcription Factor Binding Sites and allows for FDR analysis and pruning. It supports splitting of sequences based on size or a specified GFF, grouping by G+C content, and specification of Markov model order. The heavy lifting is done in C while all results are made available via R.
Package details |
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Author | Nicholas Peterson, Andre Martins, Melissa Hubisz, and Adam Siepel |
Maintainer | Ritika Ramani<rramani@cshl.edu> |
License | BSD_3_clause + file LICENSE |
Version | 0.3.15 |
URL | http://compgen.cshl.edu/rtfbs |
Package repository | View on CRAN |
Installation |
Install the latest version of this package by entering the following in R:
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