gcContent.ms: Get GC content of each sequence in an MS object
In rtfbs: Transcription Factor Binding Site Identification Tool
Description
Usage
Arguments
Value
Examples
Description
Get GC content of each sequence in an MS object
Usage
1
Arguments
ms
MS object
Value
numeric vector containing GC content of each sequence in ms.
GC content is computed as (# of GC bases)/(# of ACGT bases).
Examples
1
2
3
4
require("rtfbs")
seqs <- ms(seqs=c("AAAA", "ACACACAC", "CGCCG", "ACGTACGTACGT", "CGGGGGGGGGG"),
paste("fake", 1:5, sep=""))
gcContent.ms(seqs)
rtfbs documentation built on Jan. 22, 2020, 1:07 a.m.
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Description Usage Arguments Value Examples
Description
Get GC content of each sequence in an MS object
Usage
1 |
Arguments
ms |
MS object |
Value
numeric vector containing GC content of each sequence in ms. GC content is computed as (# of GC bases)/(# of ACGT bases).
Examples
1 2 3 4 | require("rtfbs")
seqs <- ms(seqs=c("AAAA", "ACACACAC", "CGCCG", "ACGTACGTACGT", "CGGGGGGGGGG"),
paste("fake", 1:5, sep=""))
gcContent.ms(seqs)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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