Identifies and scores possible Transcription Factor Binding Sites and allows for FDR analysis and pruning. It supports splitting of sequences based on size or a specified GFF, grouping by G+C content, and specification of Markov model order. The heavy lifting is done in C while all results are made available via R.
|Author||Nicholas Peterson, Andre Martins, Melissa Hubisz, and Adam Siepel|
|Maintainer||Ritika Ramani<[email protected]>|
|License||BSD_3_clause + file LICENSE|
|Package repository||View on CRAN|
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