rtfbs: Transcription Factor Binding Site Identification Tool
Version 0.3.5

Identifies and scores possible Transcription Factor Binding Sites and allows for FDR analysis and pruning. It supports splitting of sequences based on size or a specified GFF, grouping by G+C content, and specification of Markov model order. The heavy lifting is done in C while all results are made available via R.

Package details

AuthorNicholas Peterson, Andre Martins, Melissa Hubisz, and Adam Siepel
Date of publication2016-08-16 19:49:30
MaintainerMelissa Hubisz <mjhubisz@cornell.edu>
LicenseBSD_3_clause + file LICENSE
Version0.3.5
URL http://compgen.cshl.edu/rtfbs
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("rtfbs")

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rtfbs documentation built on May 29, 2017, 4:10 p.m.