rtfbs: Transcription Factor Binding Site Identification Tool

Identifies and scores possible Transcription Factor Binding Sites and allows for FDR analysis and pruning. It supports splitting of sequences based on size or a specified GFF, grouping by G+C content, and specification of Markov model order. The heavy lifting is done in C while all results are made available via R.

Package details

AuthorNicholas Peterson, Andre Martins, Melissa Hubisz, and Adam Siepel
MaintainerRitika Ramani<[email protected]>
LicenseBSD_3_clause + file LICENSE
Version0.3.9
URL http://compgen.cshl.edu/rtfbs
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("rtfbs")

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rtfbs documentation built on Jan. 31, 2018, 1:01 a.m.