rtfbs: Transcription Factor Binding Site Identification Tool

Identifies and scores possible Transcription Factor Binding Sites and allows for FDR analysis and pruning. It supports splitting of sequences based on size or a specified GFF, grouping by G+C content, and specification of Markov model order. The heavy lifting is done in C while all results are made available via R.

Package details

AuthorNicholas Peterson, Andre Martins, Melissa Hubisz, and Adam Siepel
MaintainerRitika Ramani<rramani@cshl.edu>
LicenseBSD_3_clause + file LICENSE
URL http://compgen.cshl.edu/rtfbs
Package repositoryView on CRAN
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rtfbs documentation built on Jan. 22, 2020, 1:07 a.m.