Files in rtfbs
Transcription Factor Binding Site Identification Tool

inst
inst/extdata
inst/extdata/NRSF.zip
inst/doc
inst/doc/vignette.Rnw
inst/doc/vignette.pdf inst/doc/vignette.R
configure.ac
tests
tests/calc_fdr.R tests/read_ms.R tests/read_pwm.R tests/build_mm.R tests/gcContent_ms.R tests/output_sites.R tests/groupByGC_ms.R tests/simulate_ms.R tests/makeFdrPlot.R tests/score_ms.R
src
src/queues.h
src/hmm.c
src/tfbs.c
src/phylo_p_print.h
src/hashtable.h
src/prob_vector.h
src/phylo_p.h
src/simplex_grid.h
src/bed.h
src/matrix.c
src/bed.c
src/maf.c
src/hashtable.c
src/rph_category_map.c
src/list_of_lists.c
src/indel_mod.h
src/em.h
src/fit_column.h
src/phylo_hmm.c
src/sufficient_stats.c
src/tree_model.c
src/gap_patterns.c
src/rph_phastCons.c
src/fit_column.c
src/rph_hmm.c
src/subst_distrib.c
src/stacks.h
src/pbs_code.h
src/list_of_lists.h
src/subst_mods.h
src/misc.c
src/sufficient_stats.h
src/rph_trees.c
src/complex_vector.h
src/fit_em.c
src/rph_phylo_hmm.c
src/eigen.h
src/rph_subst_mods.c
src/bd_phylo_hmm.h
src/phylo_p.c
src/phast_cons.h
src/vector.c
src/rph_phyloP.c
src/tfbs.h
src/version
src/em.c
src/subst_mods.c
src/vector.h
src/local_alignment.c
src/multi_msa.h
src/numerical_opt.c
src/misc.h
src/pssm.h
src/rph_list_of_lists.c
src/memory_handler.c
src/markov_matrix.h
src/indel_history.c
src/indel_history.h
src/lists.c
src/bgc_hmm.h
src/gff.h
src/fit_em.h
src/motif.c
src/phylo_fit.h
src/prob_matrix.h
src/rph_bgc_hmm.c
src/eigen.c
src/phylo_p_print.c
src/markov_matrix.c
src/msa.h
src/rph_tfbs.c
src/tree_likelihoods.c
src/local_alignment.h
src/rph_tree_model.c
src/gap_patterns.h
src/subst_distrib.h
src/fit_feature.c
src/complex_vector.c
src/rph_gff.c
src/complex_matrix.c
src/fit_feature.h
src/category_map.h
src/Makevars.in
src/category_map.c
src/multi_msa.c
src/maf.h
src/wig.c
src/external_libs.h
src/complex_matrix.h
src/rph_util.c
src/gff.c
src/stringsplus.c
src/dgamma.c
src/wig.h
src/numerical_opt.h
src/rph_msa.c
src/bgc_hmm.c
src/tree_model.h
src/memory_handler.h
src/rph_util.h
src/complex.h
src/rph_init.c
src/maf_block.c
src/maf_block.h
src/Makevars.win
src/trees.h
src/hmm.h
src/ms.h
src/stringsplus.h
src/genepred.h
src/motif.h
src/puzzler.h
src/rph_wig.c
src/msa.c
src/genepred.c
src/phylo_fit.c
src/indel_mod.c
src/phylo_hmm.h
src/trees.c
src/phast_cons.c
src/rph_phyloFit.c
src/dgamma.h
src/lists.h
src/tree_likelihoods.h
src/prob_matrix.c
src/prob_vector.c
src/matrix.h
NAMESPACE
R
R/tfbs.R
vignettes
vignettes/vignette.Rnw
MD5
build
build/vignette.rds
DESCRIPTION
configure
ChangeLog
man
man/read.mm.Rd man/lengths.ms.Rd man/simulate.ms.Rd man/read.pwm.Rd man/write.ms.Rd man/offsets.ms.Rd man/open-brace.ms.Rd man/summary.ms.Rd man/label.matrix.Rd man/read.ms.Rd man/calc.fdr.Rd man/rtfbs-package.Rd man/makeFdrPlot.Rd man/concat.ms.Rd man/length.ms.Rd man/as.pointer.ms.Rd man/from.pointer.ms.Rd man/score.ms.Rd man/split.ms.Rd man/ms.Rd man/is.pointer.ms.Rd man/gcContent.ms.Rd man/sequences.ms.Rd man/print.ms.Rd man/output.sites.Rd man/groupByGC.ms.Rd man/build.mm.Rd man/names.ms.Rd man/write.mm.Rd
cleanup
LICENSE
rtfbs documentation built on May 29, 2017, 4:10 p.m.