label.matrix: Name PWM & MM rows and columns

In rtfbs: Transcription Factor Binding Site Identification Tool

Description

Given a list of PWM or MM matrices, name the rows and columns (if applicable) This function is used for specifying the names of rows and columns for Markov Models and Position Weight Matrices(PWMs) only. In the case of naming PWMs, set columnsOnly to true, as it doesn't make sense to name the rows of a PWM. The columns are named 'A,C,G,T'. The rows are uniquely named, staring with A going to T If there are more than 4 rows, two characters are used AA, AC..., if more than 16 rows 3 characters are used, and so on.

Usage

label.matrix(mat, columnsOnly = FALSE)

Arguments

mat	Matrix of which have the column and row names populated
columnsOnly	Only name the columns, not the rows

Value

Matrix with columns and (rows optional) named

rtfbs documentation built on Jan. 22, 2020, 1:07 a.m.