fungus: MrBayes output from analysis of Hibbett et al. data
In rwty: R We There Yet? Visualizing MCMC Convergence in Phylogenetics
fungus R Documentation
MrBayes output from analysis of Hibbett et al. data
Description
This is the output from a MrBayes run of 10,000,000 generations using the analysis settings from the original .nex file.
Sampling is one tree per 40,000 generations. Four chains are included, each with its associated log file.
Usage
data(fungus)
Format
A data frame with four chains of 251 phylogenetic trees and associated likelihood and parameter values.
References
Study reference: Hibbett D., Pine E., Langer E., Langer G., & Donoghue M. 1997. Evolution of gilled
mushrooms and puffballs inferred from ribosomal DNA sequences. Proceedings of
the National Academy of Sciences of the United States of America, 94(22): 12002-12006.
http://treebase.org/treebase-web/search/study/summary.html?id=271
rwty documentation built on April 3, 2025, 9:20 p.m.
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MrBayes output from analysis of Hibbett et al. data
Description
This is the output from a MrBayes run of 10,000,000 generations using the analysis settings from the original .nex file. Sampling is one tree per 40,000 generations. Four chains are included, each with its associated log file.
Usage
data(fungus)
Format
A data frame with four chains of 251 phylogenetic trees and associated likelihood and parameter values.
References
Study reference: Hibbett D., Pine E., Langer E., Langer G., & Donoghue M. 1997. Evolution of gilled mushrooms and puffballs inferred from ribosomal DNA sequences. Proceedings of the National Academy of Sciences of the United States of America, 94(22): 12002-12006.
http://treebase.org/treebase-web/search/study/summary.html?id=271
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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