View source: R/makeplot.acsf.sliding.R
makeplot.acsf.sliding | R Documentation |
This function takes one or more rwty.chain ojects and returns a plot of CSF within each chain as the MCMC progresses. The solid line with points shows the Average Change in Split Frequencies (ACSF) between this window and the previous window The grey ribbon shows the upper and lower 95
makeplot.acsf.sliding(chains, burnin = 0, window.size = 20, facet = TRUE)
chains |
A list of rwty.chain objects. |
burnin |
The number of trees to eliminate as burnin. Defaults to zero. |
window.size |
The number of trees to include in each window (note, specified as a number of sampled trees, not a number of generations) |
facet |
(TRUE/FALSE). TRUE: return a single plot with one facet per chain; FALSE: return a list of individual plots with one plot per chain |
output A plof of the CSF between sliding windows over all chains
acsf.plot A ggplot object, or list of ggplot objects
## Not run:
data(fungus)
makeplot.acsf.sliding(fungus, burnin=20)
## End(Not run)
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