load.multi: Load all matching files from a directory into a list of...

In rwty: R We There Yet? Visualizing MCMC Convergence in Phylogenetics

Load all matching files from a directory into a list of rwty.chain objects

Description

Finds trees and log files based on format definition, returns rwty.chain objects containing both

Usage

load.multi(path = ".", format = "mb", labels = NA, ...)

Arguments

path	The path to the directory containing tree and log files
format	File format, which is used to find tree and log files. Currently accepted values are "mb" for MrBayes, "beast" for BEAST, "*beast" for *BEAST, and "revbayes" for RevBayes. If you would like RWTY to understand additional formats, please contact the authors and send us some sample data.
labels	A vector of names to assign to chains as they are read in.
...	Further arguments to be passed to load.trees.

Value

output A list of rwty.chain objects containing the multiPhylos and the tables of values from the log files if available.

Examples

#load.multi(path = "~/my trees/", format = "*beast")

rwty documentation built on April 3, 2025, 9:20 p.m.