Nothing
## ---- include = FALSE---------------------------------------------------------
knitr::opts_chunk$set(
collapse = TRUE,
comment = "#>"
)
## ----setup, message=FALSE, warning=FALSE--------------------------------------
library(sbm)
## ----param all----------------------------------------------------------------
nbLayers <- 2
## ----Independant Poisson bernoulli--------------------------------------------
Nnodes <- 40
blockProp <- c(.4,.6)
set.seed(1)
connectParam <- list(list(mean=matrix(rbeta(4,.5,.5),2,2)),list(mean=matrix(rexp(4,.5),2,2)))
model <- c("bernoulli","poisson")
type <- "directed"
mySampleMultiplexSBM_PB <-
sampleMultiplexSBM(
nbNodes = Nnodes,
blockProp = blockProp,
nbLayers = nbLayers,
connectParam = connectParam,
model=model,
dimLabels = c('Individuals'), # generic name of the nodes
type=type,
seed = 1)
listSBM_PB <- mySampleMultiplexSBM_PB$listSBM
names(listSBM_PB) <- c("Bernoulli","Poisson")
plotMyMultiplexMatrix(listSBM_PB)
## -----------------------------------------------------------------------------
listSBM_PB
## -----------------------------------------------------------------------------
blockProp <- list(c(0.3, 0.3, 0.4), c(0.5, 0.5))
Q <- sapply(blockProp, function(p) length(p))
nbNodes <- c(80, 30)
connectParam <- list()
connectParam$mu <- vector("list", nbLayers)
connectParam$mu[[1]] <- matrix(0.1, Q[1], Q[2]) + matrix(c(1, 1, 1, 0,
1, 0), Q[1], Q[2])
connectParam$mu[[2]] <- matrix(-2, Q[1], Q[2]) + matrix(c(1, 3, 2, 1, 2,
3), Q[1], Q[2])
connectParam$Sigma <- matrix(c(2, 1, 0.1, 4), nbLayers, nbLayers)
model <- rep("gaussian", 2)
mySampleMultiplexSBM_GG <-
sampleMultiplexSBM(
nbNodes = nbNodes,
blockProp = blockProp,
nbLayers = nbLayers,
connectParam = connectParam,
model = model,
type = "bipartite",
dependent = TRUE,
dimLabels = c('row', 'col'),
seed = 1)
listSBM_GG <- mySampleMultiplexSBM_GG$listSBM
plotMyMultiplexMatrix(listSBM_GG)
## -----------------------------------------------------------------------------
## MultiplexSBM Bernoulli with dependence
Q <- 2
set.seed(94)
P00 <- matrix(runif(Q * Q), Q, Q)
P10 <- matrix(runif(Q * Q), Q, Q)
P01 <- matrix(runif(Q * Q), Q, Q)
P11 <- matrix(runif(Q * Q), Q, Q)
SumP <- P00 + P10 + P01 + P11
P00 <- P00/SumP
P01 <- P01/SumP
P10 <- P10/SumP
P11 <- P11/SumP
connectParam <- list()
connectParam$prob00 <- P00
connectParam$prob01 <- P01
connectParam$prob10 <- P10
connectParam$prob11 <- P11
model <- rep("bernoulli", 2)
type <- "directed"
nbLayers <- 2
Nnodes <- 40
blockProp <- c(0.6, 0.4)
mySampleMultiplexSBM <-
sampleMultiplexSBM(
nbNodes = Nnodes,
blockProp = blockProp,
nbLayers = nbLayers,
connectParam = connectParam,
model = model,
type = type,
dependent = TRUE,
seed = 1)
listSBM_BB <- mySampleMultiplexSBM$listSBM
plotMyMultiplexMatrix(listSBM_BB)
## ---- echo = FALSE, eval = TRUE-----------------------------------------------
load(file = 'resVignetteSimuMultiplex.rda')
## ---- echo = TRUE, eval = FALSE-----------------------------------------------
# res_PB <- estimateMultiplexSBM(listSBM_PB)
# res_PB$storedModels
## ---- echo = FALSE, eval = TRUE-----------------------------------------------
res_PB$storedModels
## ---- echo = TRUE, eval = TRUE------------------------------------------------
plot(res_PB)
## ---- echo = TRUE, eval = TRUE------------------------------------------------
plot(res_PB, type = 'expected')
## -----------------------------------------------------------------------------
All <- plotAlluvial(list(simulated = mySampleMultiplexSBM_PB$memberships$Individuals, estim = res_PB$memberships$Individuals))
All
## ---- echo = TRUE, eval = FALSE-----------------------------------------------
# res_GG <- estimateMultiplexSBM(listSBM_GG, dependent = TRUE, estimOptions = list(plot = FALSE, verbosity = 0 ))
# res_GG$storedModels
## ---- echo = FALSE, eval = TRUE-----------------------------------------------
res_GG$storedModels
## ---- echo = TRUE, eval = TRUE------------------------------------------------
plot(res_GG)
## ---- echo = TRUE, eval = FALSE-----------------------------------------------
# res_BB <- estimateMultiplexSBM(listSBM_BB,dependent = TRUE, estimOptions = list(plot = FALSE, verbosity = 0 ))
# res_BB$storedModels
## ---- echo = FALSE, eval = TRUE-----------------------------------------------
res_BB$storedModels
Any scripts or data that you put into this service are public.
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.