Man pages for scOntoMatch
Aligning Ontology Annotation Across Single Cell Datasets with 'scOntoMatch'

check_ontology_translatemake sure ontology names are all translated to ontology ids...
fill_queryGet a names list of ontology and id by id
getOntologyIdGet a names list of ontology and id by name
getOntologyNameGet a names list of ontology and id by id
getOntoMappingmatch ontology terms by direct mapping and mapping...
getOntoMinimalmatch descendant terms to ancestor terms within a dataset
getOntoMultiMappingMatch descendants to ancestors in multiple ontology id lists
getSeuratRdsread in seurat object .rds files as a named list of seurat...
ontoMinimalget the minimal ontology tree of a dataset by reducing...
ontoMultiMatchCore function of scOntoMatch Match the ontology annotation of...
ontoMultiMinimalget the minimal ontology tree of a list of seurat objects by...
ontoTranslatetranslate named list of obj_list to named list of cell...
plotMatchedOntoTreePlot a ontology tree with matched ontology from ontoMatch
plotOntoTreePlot a tree representation of ontology terms
scOntoMatch documentation built on Nov. 2, 2023, 5:20 p.m.