plotOntoTree: Plot a tree representation of ontology terms

In scOntoMatch: Aligning Ontology Annotation Across Single Cell Datasets with 'scOntoMatch'

Plot a tree representation of ontology terms

Description

Plot a tree representation of ontology terms

Usage

plotOntoTree(
  ont,
  onts,
  plot_ancestors = TRUE,
  ont_query = NULL,
  roots = c("CL:0000548"),
  ...
)

Arguments

ont	ontology object
onts	ontology ids to plot
plot_ancestors	if plot ancestors or not
ont_query	query ontology to highlight in the tree
roots	root ontology in tree, default "animal cells" in cell ontology
...	additional parameters for ontologyPlot::onto_plot

Value

an ontology tree plot

Examples

## Not run: 
plotOntoTree(ont = ont, onts = c("CL:0000066", "CL:0000082"), ont_query = c("CL:0000082"))

## End(Not run)

scOntoMatch documentation built on Nov. 2, 2023, 5:20 p.m.