check_ontology_translate: make sure ontology names are all translated to ontology ids...
In scOntoMatch: Aligning Ontology Annotation Across Single Cell Datasets with 'scOntoMatch'
View source: R/helper_functions.R
check_ontology_translate R Documentation
make sure ontology names are all translated to ontology ids
while warning, consider manual reannotation
Description
make sure ontology names are all translated to ontology ids
while warning, consider manual reannotation
Usage
check_ontology_translate(obj, onts, ont, anno_col)
Arguments
obj
seurat rds object
onts
ontology ids from translate
ont
ontologyIndex object
anno_col
annotation column in obj@meta.data that is translated to onts ids
Value
do not return a value but output messages
scOntoMatch documentation built on Nov. 2, 2023, 5:20 p.m.
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View source: R/helper_functions.R
| check_ontology_translate | R Documentation |
make sure ontology names are all translated to ontology ids while warning, consider manual reannotation
Description
make sure ontology names are all translated to ontology ids while warning, consider manual reannotation
Usage
check_ontology_translate(obj, onts, ont, anno_col)
Arguments
obj |
seurat rds object |
onts |
ontology ids from translate |
ont |
ontologyIndex object |
anno_col |
annotation column in obj@meta.data that is translated to onts ids |
Value
do not return a value but output messages
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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