ontoTranslate: translate named list of obj_list to named list of cell...

In scOntoMatch: Aligning Ontology Annotation Across Single Cell Datasets with 'scOntoMatch'

translate named list of obj_list to named list of cell ontology ids per obj

Description

translate named list of obj_list to named list of cell ontology ids per obj

Usage

ontoTranslate(obj_list, ont, onto_id_col, anno_col)

Arguments

obj_list	a named list of seurat object
ont	ontologyIndex object
onto_id_col	if also have ontology id column for direct mapping
anno_col	the cell ontology text annotation column name

Value

a named list of cell ontology ids

Examples

## Not run: 
ontoTranslate(seurat_obj_list, ont, 'ontology_name', 'ontology_id')

## End(Not run)

scOntoMatch documentation built on Nov. 2, 2023, 5:20 p.m.