ontoMultiMatch: Core function of scOntoMatch Match the ontology annotation of...

In scOntoMatch: Aligning Ontology Annotation Across Single Cell Datasets with 'scOntoMatch'

Core function of scOntoMatch Match the ontology annotation of multiple seurat objects

Description

Core function of scOntoMatch Match the ontology annotation of multiple seurat objects

Usage

ontoMultiMatch(obj_list, anno_col, onto_id_col, ont)

Arguments

obj_list	a namesd list of seurat objects to match
anno_col	the cell ontology text annotation column name
onto_id_col	if also have ontology id column for direct mapping
ont	ontologyIndex object

Value

a list of seurat objects with annotation ontology mapped to each-other in obs[['cell_ontology_mapped']]

Examples

## Not run: 
ontoMultiMatch(seurat_obj_list, ont, "ontology_name", 'ontology_id')

## End(Not run)

scOntoMatch documentation built on Nov. 2, 2023, 5:20 p.m.