getOntoMapping: match ontology terms by direct mapping and mapping...

In scOntoMatch: Aligning Ontology Annotation Across Single Cell Datasets with 'scOntoMatch'

match ontology terms by direct mapping and mapping descendants to ancestors

Description

match ontology terms by direct mapping and mapping descendants to ancestors

Usage

getOntoMapping(ont, onts1, onts2)

Arguments

ont	the ontology object from get_OBO
onts1	a character vector of ontology id
onts2	a character vector of ontology id

Value

a named list for ontology id mapping looks like ontology_id:ontology_id

Examples

## Not run: 
getOntoMapping(ont = ont, onts1 = "CL:0000548", onts2 = c("CL0000548", "CL:0000066"))

## End(Not run)

scOntoMatch documentation built on Nov. 2, 2023, 5:20 p.m.