A normalization method for single-cell UMI count data using a variance stabilizing transformation. The transformation is based on a negative binomial regression model with regularized parameters. As part of the same regression framework, this package also provides functions for batch correction, and data correction/denoising.
|Author||Christoph Hafemeister [aut, cre] (<https://orcid.org/0000-0001-6365-8254>)|
|Maintainer||Christoph Hafemeister <[email protected]>|
|License||GPL-3 | file LICENSE|
|Package repository||View on CRAN|
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