sctransform: Variance Stabilizing Transformations for Single Cell UMI Data

A normalization method for single-cell UMI count data using a variance stabilizing transformation. The transformation is based on a negative binomial regression model with regularized parameters. As part of the same regression framework, this package also provides functions for batch correction, and data correction/denoising.

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Package details

AuthorChristoph Hafemeister [aut, cre] (<>)
MaintainerChristoph Hafemeister <[email protected]>
LicenseGPL-3 | file LICENSE
Package repositoryView on CRAN
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sctransform documentation built on Nov. 18, 2018, 5:04 p.m.