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A normalization method for singlecell UMI count data using a variance stabilizing transformation. The transformation is based on a negative binomial regression model with regularized parameters. As part of the same regression framework, this package also provides functions for batch correction, and data correction. See Hafemeister and Satija (2019) <doi:10.1186/s1305901918741>, and Choudhary and Satija (2022) <doi:10.1186/s13059021025849> for more details.
Package details 


Author  Christoph Hafemeister [aut] (<https://orcid.org/0000000163658254>), Saket Choudhary [aut, cre] (<https://orcid.org/0000000152027633>), Rahul Satija [ctb] (<https://orcid.org/0000000194488833>) 
Maintainer  Saket Choudhary <schoudhary@nygenome.org> 
License  GPL3  file LICENSE 
Version  0.4.1 
URL  https://github.com/satijalab/sctransform 
Package repository  View on CRAN 
Installation 
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