API for sctransform
Variance Stabilizing Transformations for Single Cell UMI Data

Global functions
compare_expression Man page Source code
compare_expression_full Source code
correct Man page Source code
correct_counts Man page Source code
deviance_residual Source code
diff_mean_test Man page Source code
distribution_shift Source code
fit_glmGamPoi Source code
fit_nb Source code
fit_nb_fast Source code
fit_nb_theta_given Source code
fit_poisson Source code
fit_qpoisson Source code
generate Man page Source code
get_model_par_mat Source code
get_model_pars Source code
get_model_pars_nonreg Source code
get_model_var Man page Source code
get_nb_fit Source code
get_residual_var Man page Source code
get_residuals Man page Source code
grouped_mean_diff_per_row Source code
is_outlier Man page Source code
make_cell_attr Source code
mean_boot Source code
mean_boot_grouped Source code
model_comparison_lrt Source code
model_comparison_lrt_free Source code
model_comparison_lrt_free1 Source code
model_comparison_lrt_free2 Source code
model_comparison_lrt_free3 Source code
model_comparison_ttest Source code
np_de_test Source code
pbmc Man page
pearson_residual Source code
plot_model Man page Source code
plot_model_pars Man page Source code
qpois_reg Source code
reg_model_pars Source code
reg_pars Source code
reverse_regression Source code
robust_scale Man page Source code
robust_scale_binned Man page Source code
row_gmean Man page Source code
row_gmean_dgcmatrix Source code
row_gmean_grouped_dgcmatrix Source code
row_mean_dgcmatrix Source code
row_mean_grouped_dgcmatrix Source code
row_nonzero_count_dgcmatrix Source code
row_nonzero_count_grouped_dgcmatrix Source code
row_var Man page Source code
row_var_dgcmatrix Source code
smooth_via_pca Man page Source code
sq_deviance_residual Source code
vst Man page Source code
sctransform documentation built on Jan. 13, 2021, 10:48 p.m.