Man pages for sctransform
Variance Stabilizing Transformations for Single Cell UMI Data

compare_expressionCompare gene expression between two groups
correctCorrect data by setting all latent factors to their median...
correct_countsCorrect data by setting all latent factors to their median...
diff_mean_testNon-parametric differential expression test for sparse...
generateGenerate data from regularized models.
get_model_varReturn average variance under negative binomial model
get_residualsReturn Pearson or deviance residuals of regularized models
get_residual_varReturn variance of residuals of regularized models
is_outlierIdentify outliers
pbmcPeripheral Blood Mononuclear Cells (PBMCs)
plot_modelPlot observed UMI counts and model
plot_model_parsPlot estimated and fitted model parameters
robust_scaleRobust scale using median and mad
robust_scale_binnedRobust scale using median and mad per bin
row_gmeanGeometric mean per row
row_varVariance per row
smooth_via_pcaSmooth data by PCA
vstVariance stabilizing transformation for UMI count data
sctransform documentation built on Jan. 13, 2021, 10:48 p.m.