plot_model_pars: Plot estimated and fitted model parameters

Description Usage Arguments Value Examples

View source: R/plotting.R

Description

Plot estimated and fitted model parameters

Usage

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plot_model_pars(
  vst_out,
  show_theta = FALSE,
  show_var = FALSE,
  verbosity = 2,
  verbose = NULL,
  show_progress = NULL
)

Arguments

vst_out

The output of a vst run

show_theta

Whether to show the theta parameter; default is FALSE (only the overdispersion factor is shown)

show_var

Whether to show the average model variance; default is FALSE

verbosity

An integer specifying whether to show only messages (1), messages and progress bars (2) or nothing (0) while the function is running; default is 2

verbose

Deprecated; use verbosity instead

show_progress

Deprecated; use verbosity instead

Value

A ggplot object

Examples

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vst_out <- vst(pbmc, return_gene_attr = TRUE)
plot_model_pars(vst_out)

sctransform documentation built on Jan. 13, 2021, 10:48 p.m.