plot_model_pars: Plot estimated and fitted model parameters

In sctransform: Variance Stabilizing Transformations for Single Cell UMI Data

Plot estimated and fitted model parameters

Description

Plot estimated and fitted model parameters

Usage

plot_model_pars(
  vst_out,
  xaxis = "gmean",
  show_theta = FALSE,
  show_var = FALSE,
  verbosity = 2,
  verbose = NULL,
  show_progress = NULL
)

Arguments

vst_out	The output of a vst run
xaxis	Variable to plot on X axis; default is "gmean"
show_theta	Whether to show the theta parameter; default is FALSE (only the overdispersion factor is shown)
show_var	Whether to show the average model variance; default is FALSE
verbosity	An integer specifying whether to show only messages (1), messages and progress bars (2) or nothing (0) while the function is running; default is 2
verbose	Deprecated; use verbosity instead
show_progress	Deprecated; use verbosity instead

Value

A ggplot object

Examples

vst_out <- vst(pbmc, return_gene_attr = TRUE)
plot_model_pars(vst_out)

sctransform documentation built on Oct. 19, 2023, 9:08 a.m.