Files in sdmTMB

Spatial and Spatiotemporal SPDE-Based GLMMs with 'TMB'

NEWS.md R/tidy.R R/fit.R R/mesh.R R/print.R R/methods.R R/plot-pc-matern.R R/check.R R/priors.R R/enum.R R/emmeans.R R/families.R R/data.R R/predict.R R/deprecated.R R/gather-spread.R R/index.R R/stacking.R R/plot.R R/smoothers.R R/extra-optimization.R R/residuals.R R/get-index-sims.R R/tmb-sim.R R/visreg.R R/zzz.R R/cross-val.R R/crs.R R/dharma.R R/utils.R inst/doc/model-description.Rmd inst/doc/model-description.R tests/testthat.R tests/testthat/test-2-print-anisotropy.R tests/testthat/test-reml.R tests/testthat/test-threshold-models.R tests/testthat/test-mcmc-resid.R tests/testthat/test-5-residuals.R tests/testthat/test-6-tmb-simulation.R tests/testthat/test-factor-levels.R tests/testthat/test-tidy.R tests/testthat/test-nonstationary.R tests/testthat/test-delta-population-predictions.R tests/testthat/test-methods.R tests/testthat/test-1-visreg.R tests/testthat/test-smooths.R tests/testthat/test-offset.R tests/testthat/test-index.R tests/testthat/test-prediction-missing-years.R tests/testthat/test-extra-time.R tests/testthat/test-forecasting.R tests/testthat/test-tinyVAST.R tests/testthat/test-plots.R tests/testthat/test-3-families.R tests/testthat/test-random-intercepts.R tests/testthat/test-without-spatial.R tests/testthat/test-varying-epsilon.R tests/testthat/test-1-fit-basic.R tests/testthat/test-priors.R tests/testthat/test-mix.R tests/testthat/test-deprecated-args.R tests/testthat/Rplots.pdf tests/testthat/test-2-fit-less-basic.R tests/testthat/test-extra-optimization.R tests/testthat/test-delta.R tests/testthat/test-tmb-simulation.R tests/testthat/test-sanity.R tests/testthat/test-utm-conversions.R tests/testthat/test-cross-validation.R tests/testthat/test-8-delta2.R tests/testthat/test-4-index-calculation.R tests/testthat/test-aniso-plots.R tests/testthat/test-parameter-bounds.R tests/testthat/test-9-mvn-simulation.R tests/testthat/test-link-prediction.R tests/testthat/test-dharma.R tests/testthat/test-links.R tests/testthat/test-share-range.R tests/testthat/test-sdmTMB-simulate.R tests/testthat/test-time-varying.R tests/testthat/test-ggeffect.R tests/testthat/test-3-spatial-varying.R vignettes/model-description.Rmd man/Effect.sdmTMB.Rd man/residuals.sdmTMB.Rd man/reexports.Rd man/simulate.sdmTMB.Rd man/get_index_sims.Rd man/plot_anisotropy.Rd man/surveydata.Rd man/extract_mcmc.Rd man/sdmTMBcontrol.Rd man/priors.Rd man/gather_sims.Rd man/get_pars.Rd man/make_mesh.Rd man/sdmTMB.Rd man/plot_pc_matern.Rd man/dharma_residuals.Rd man/sdmTMB_stacking.Rd man/sdmTMB_cv.Rd man/replicate_df.Rd man/add_barrier_mesh.Rd man/add_utm_columns.Rd man/ggplot2_installed.Rd man/sanity.Rd man/run_extra_optimization.Rd man/emmeans.sdmTMB.Rd man/visreg_delta.Rd man/plot_smooth.Rd man/tidy.sdmTMB.Rd man/sdmTMB_simulate.Rd man/get_index.Rd man/predict.sdmTMB.Rd man/set_delta_model.Rd man/families.Rd