API for secr
Spatially Explicit Capture-Recapture
| Global functions | |
|---|---|
| AIC.secr | Man page |
| AIC.secrlist | Man page |
| AICcompatible | Man page |
| AICcompatible.secr | Man page Source code |
| AICcompatible.secrlist | Man page Source code |
| ARL | Man page |
| CV | Man page |
| CVa | Man page |
| CVa0 | Man page |
| CVpdot | Man page |
| Coulombe | Man page |
| D.designdata | Man page |
| Detection functions | Man page |
| Dfn2 | Man page |
| Dsurface | Man page |
| Dsurface-class | Man page |
| Enk | Man page |
| FAQ | Man page |
| Fletcher.chat | Man page Source code |
| GSM | Man page |
| LLonly | Man page |
| LLsurface | Man page |
| LLsurface.secr | Man page |
| LR.test | Man page |
| LStraps | Man page |
| MCgof | Man page |
| MCgof.secr | Man page |
| MCgof.secrlist | Man page |
| MMDM | Man page |
| MS.capthist | Man page |
| Multi-core processing | Man page |
| ORL | Man page |
| OVpossum | Man page |
| OVpossumCH | Man page |
| PG | Man page |
| Parallel | Man page |
| RMarkInput | Man page |
| RPSV | Man page |
| RSE | Man page |
| Rsurface | Man page |
| Speed tips | Man page |
| Tm | Man page |
| Tm<- | Man page |
| Tn | Man page |
| Tn<- | Man page |
| Troubleshooting | Man page |
| Tsightinglikcpp | Source code |
| Tu | Man page |
| Tu<- | Man page |
| [.secrlist | Man page |
| addCovariates | Man page |
| addSightings | Man page |
| addTelemetry | Man page |
| adjustVarD | Man page Source code |
| alive | Man page |
| alongtransect | Man page |
| alongtransectcpp | Source code |
| animalID | Man page |
| append.capthist | Man page |
| as.array | Man page |
| as.array.capthist | Man page Source code |
| as.data.frame | Man page |
| as.data.frame.capthist | Man page |
| as.data.frame.traps | Man page |
| as.mask | Man page |
| as.popn | Man page |
| attenuationplot | Man page |
| autoini | Man page |
| bias.D | Man page |
| bin | Source code |
| binCovariate | Man page |
| bisect | Source code |
| blackbear | Man page |
| blackbear.0 | Man page |
| blackbear.h2bk | Man page |
| blackbearCH | Man page |
| boundarytoSF | Man page |
| buffer.contour | Man page |
| bufferContour | Man page |
| c.secrlist | Source code |
| capped | Man page |
| cappedgkhkcpp | Source code |
| captXY | Man page |
| captdata | Man page |
| capthist | Man page |
| centroids | Man page |
| chat.nk | Man page Source code |
| chat.nk.sess | Source code |
| circular.p | Man page |
| circular.r | Man page |
| clean.mlogit | Source code |
| clip.hex | Man page |
| clone | Man page |
| clone.capthist | Man page |
| clone.default | Man page |
| clone.popn | Man page |
| closedN | Man page |
| closure.test | Man page |
| cluster | Man page |
| cluster.centres | Man page |
| cluster.counts | Man page |
| clusterID | Man page |
| clusterID<- | Man page |
| clustertrap | Man page |
| clustertrap<- | Man page |
| coef.secr | Man page |
| collate | Man page |
| collate.ipsecr | Man page |
| collate.secr | Man page |
| collate.secrlist | Man page |
| completeDbeta | Source code |
| confint.secr | Man page |
| count | Man page |
| counts | Man page |
| covariates | Man page |
| covariates<- | Man page |
| dbar | Man page |
| deermouse | Man page |
| deermouse.ESG | Man page |
| deermouse.WSG | Man page |
| defaulttestfn | Source code |
| defunct | Man page |
| deleteMaskPoints | Man page |
| derived | Man page |
| derived.secr | Man page |
| derived.secrlist | Man page |
| derivedCluster | Man page |
| derivedDcoef | Man page |
| derivedDsurface | Man page |
| derivedExternal | Man page |
| derivedMash | Man page |
| derivedSession | Man page |
| derivedSystematic | Man page |
| derivednj | Man page |
| details | Man page |
| detectfn | Man page |
| detectfnplot | Man page |
| detector | Man page |
| detector<- | Man page |
| detectpar | Man page |
| detectpar.default | Source code |
| detectpar.secr | Man page Source code |
| detectpar0 | Source code |
| deviance | Man page |
| deviance.secr | Man page |
| df.residual | Man page |
| df.residual.secr | Man page |
| discretize | Man page |
| distancetotrap | Man page |
| edist | Man page |
| edist2cpp | Source code |
| effort | Man page |
| ellipse.bvn | Man page |
| ellipse.secr | Man page |
| empirical.varD | Man page |
| esa | Man page |
| esa.plot | Man page |
| esa.secr | Man page |
| esaPlot | Man page |
| expanddet | Source code |
| expdetectpointcpp | Source code |
| expected.n | Man page |
| expectedmucpp | Source code |
| extractMoves | Man page |
| fasthistoriescpp | Source code |
| fixedbeta | Man page |
| flatten | Source code |
| flip | Man page |
| flip.popn | Man page |
| flip.traps | Man page |
| fx.total | Man page |
| fxTotal | Man page |
| fxTotal.secr | Man page |
| fxi | Man page |
| fxi.contour | Man page |
| fxi.mode | Man page |
| fxi.secr | Man page |
| fxiContour | Man page |
| fxiMode | Man page |
| gamsetup | Source code |
| getMeanSD | Man page Source code |
| getdenomcpp | Source code |
| gethcpp | Source code |
| gethr | Source code |
| getk | Source code |
| getknownclass | Source code |
| getmaskpar | Source code |
| getmiscparm | Source code |
| getpID | Source code |
| getpmix | Source code |
| getpmixall | Source code |
| getxy | Source code |
| gridCells | Man page |
| hcov | Man page |
| hdotpolycpp | Source code |
| head.Dsurface | Man page |
| head.capthist | Man page |
| head.mask | Man page |
| head.traps | Man page |
| hist.MCgof | Man page Source code |
| hornedlizard | Man page |
| hornedlizardCH | Man page |
| housemouse | Man page |
| infraCH | Man page |
| insertdim | Man page |
| insidecpp | Source code |
| interference | Man page |
| intervals | Man page |
| intervals<- | Man page |
| invlogit | Man page |
| ip.secr | Man page |
| is.wholenumber | Source code |
| join | Man page |
| kfn | Man page |
| lineoCH | Man page |
| list.secr.fit | Man page |
| logLik.secr | Man page Source code |
| logit | Man page |
| logmultinom | Man page |
| make.capthist | Man page |
| make.circle | Man page |
| make.grid | Man page |
| make.hex | Man page |
| make.lacework | Man page |
| make.lookup | Man page |
| make.mask | Man page |
| make.newdata | Man page |
| make.poly | Man page |
| make.spcosa | Man page |
| make.systematic | Man page |
| make.telemetry | Man page |
| make.transect | Man page |
| make.tri | Man page |
| makeNewData | Man page |
| makeNewData.default | Man page |
| makeNewData.secr | Man page |
| makeStart | Man page |
| makegk | Source code |
| makegkPointcpp | Source code |
| makegkPolygoncpp | Source code |
| makelookupcpp | Source code |
| markocc | Man page |
| markocc<- | Man page |
| mash | Man page Source code |
| mask | Man page |
| mask-class | Man page |
| mask.check | Man page |
| maskarea | Man page |
| masklength | Man page |
| masksize | Man page |
| maxdistance | Man page |
| miscparm | Man page |
| model.average | Man page |
| modelAverage | Man page |
| modelAverage.secr | Man page |
| modelAverage.secrlist | Man page |
| movematcpp | Source code |
| moves | Man page |
| ms | Man page |
| ms.default | Man page |
| ms.mask | Man page |
| ms.secr | Man page |
| ms.secrtest | Source code |
| multi | Man page |
| n.unique.rows | Source code |
| naivecap3cpp | Source code |
| naivedcpp | Source code |
| ncores | Man page |
| nearestcpp | Source code |
| nearesttrap | Man page |
| nedist | Man page |
| newdata | Man page |
| nk | Man page Source code |
| nk2 | Source code |
| nkpointcpp | Source code |
| noise | Man page |
| noise.capthist | Man page |
| noise.default | Source code |
| noise<- | Man page |
| noneuc | Man page |
| nontarget | Man page |
| nontarget<- | Man page |
| occasion | Man page |
| occasionKey | Man page |
| ontransectcpp | Source code |
| ovenCH | Man page |
| ovenCHp | Man page |
| ovenbird | Man page |
| ovenbird.model.1 | Man page |
| ovenbird.model.D | Man page |
| ovenmask | Man page |
| ovensong | Man page |
| ovensong.model.1 | Man page |
| ovensong.model.2 | Man page |
| par.derived | Man page |
| par.region.N | Man page |
| par.secr.fit | Man page |
| param | Man page |
| pdot | Man page |
| pdot.contour | Man page |
| pdotContour | Man page |
| pdotpointcpp | Source code |
| pfn | Man page |
| plot.Dsurface | Man page |
| plot.MCgof | Man page Source code |
| plot.Rsurface | Man page |
| plot.capthist | Man page Source code |
| plot.mask | Man page Source code |
| plot.popn | Man page |
| plot.secr | Man page |
| plot.secrlist | Man page |
| plot.secrtest | Man page Source code |
| plot.traps | Man page Source code |
| plotMCP | Man page Source code |
| plotMaskEdge | Man page |
| pmixProfileLL | Man page |
| pointsInPolygon | Man page |
| polyID | Man page |
| polyID<- | Man page |
| polyarea | Man page |
| polygon | Man page |
| polygonX | Man page |
| polygonfxicpp | Source code |
| polygonhistoriescpp | Source code |
| popn | Man page |
| population size | Man page |
| possum | Man page |
| possum.model.0 | Man page |
| possum.model.Ds | Man page |
| possumCH | Man page |
| possumarea | Man page |
| possummask | Man page |
| possumremovalarea | Man page |
| predict.secr | Man page |
| predict.secrlist | Man page |
| predictDlambda | Man page |
| predictDsurface | Man page |
| print.Dsurface | Man page |
| print.MCgof | Man page |
| print.capthist | Man page |
| print.secr | Man page |
| print.secrdata | Source code |
| print.secrlist | Source code |
| print.secrtest | Man page |
| print.summary.capthist | Man page |
| print.summary.mask | Man page |
| print.summary.popn | Man page |
| print.summary.traps | Man page |
| print.traps | Man page Source code |
| proj | Source code |
| proximity | Man page |
| random numbers | Man page |
| randomDensity | Man page |
| randomHabitat | Man page |
| rast | Man page |
| rast,Dsurface-method | Man page |
| rast,mask-method | Man page |
| raster | Man page |
| raster,Dsurface-method | Man page |
| raster,mask-method | Man page |
| rbind.capthist | Man page |
| rbind.mask | Man page |
| rbind.popn | Man page |
| rbind.traps | Man page |
| read.DA | Man page |
| read.SPACECAP | Man page |
| read.capthist | Man page |
| read.mask | Man page |
| read.telemetry | Man page |
| read.traps | Man page |
| rectangularMask | Man page |
| reduce | Man page |
| reduce.capthist | Man page |
| reduce.default | Man page |
| reduce.traps | Man page |
| region.N | Man page |
| region.N.secr | Man page |
| region.N.secrlist | Man page |
| rlnormCV | Man page Source code |
| rotate | Man page |
| rotate.capthist | Source code |
| rotate.popn | Man page |
| rotate.traps | Man page |
| saveprogress | Man page |
| score.table | Man page |
| score.test | Man page |
| searcharea | Man page |
| secr | Man page |
| secr-defunct | Man page |
| secr-deprecated | Man page |
| secr-package | Man page |
| secr-version5 | Man page |
| secr.design.MS | Man page |
| secr.fit | Man page |
| secr.make.newdata | Man page |
| secr.refit | Man page |
| secr.test | Man page |
| secrRNG | Man page |
| secrdemo | Man page |
| secrdemo.0 | Man page |
| secrdemo.CL | Man page |
| secrdemo.b | Man page |
| secrlist | Man page Source code |
| secrtest | Man page |
| seed | Man page |
| session | Man page |
| session<- | Man page |
| sessionlabels | Man page |
| sessionlabels<- | Man page |
| setNumThreads | Man page |
| shareFactorLevels | Man page |
| shift | Man page |
| shift.mask | Man page |
| shift.popn | Man page |
| shift.traps | Man page |
| sighting | Man page Source code |
| sightingPlot | Man page |
| sightingchatcpp | Source code |
| sightings | Man page |
| signal | Man page Man page |
| signal.capthist | Man page |
| signal.default | Source code |
| signal<- | Man page |
| signalCH | Man page |
| signalframe | Man page |
| signalframe<- | Man page |
| signalhistoriescpp | Source code |
| signalmatrix | Man page |
| sim.capthist | Man page |
| sim.detect | Man page |
| sim.popn | Man page |
| sim.resight | Man page |
| sim.secr | Man page |
| simdetectpointcpp | Source code |
| simdetectpolycpp | Source code |
| simdetectsignalcpp | Source code |
| simplehistoriescpp | Source code |
| simplehistoriesfxicpp | Source code |
| simulate | Man page |
| simulate.secr | Man page |
| single | Man page |
| skink | Man page |
| smooths | Man page |
| snip | Man page |
| sort.capthist | Man page |
| sort.mask | Man page |
| spacing | Man page |
| spacing.mask | Man page |
| spacing.traps | Man page |
| spacing<- | Man page |
| speed | Man page |
| split.capthist | Man page |
| split.mask | Man page |
| split.traps | Man page |
| spotHeight | Man page |
| stoat.model.EX | Man page |
| stoat.model.HN | Man page |
| stoatCH | Man page |
| stoatDNA | Man page |
| strip.legend | Man page |
| subset.capthist | Man page |
| subset.mask | Man page |
| subset.popn | Man page |
| subset.traps | Man page |
| suggest.buffer | Man page |
| summary.Dsurface | Man page |
| summary.MCgof | Man page Source code |
| summary.capthist | Man page Source code |
| summary.mask | Man page Source code |
| summary.popn | Man page Source code |
| summary.secr | Man page |
| summary.traps | Man page Source code |
| tail.Dsurface | Man page |
| tail.capthist | Man page |
| tail.mask | Man page |
| tail.traps | Man page |
| telemetered | Man page |
| telemetry.LC | Source code |
| telemetry.LCmask | Source code |
| telemetry.LT | Source code |
| telemetrytype | Man page |
| telemetrytype<- | Man page |
| telemetryxy | Man page |
| telemetryxy<- | Man page |
| tile | Man page |
| timevaryingcov | Man page |
| timevaryingcov<- | Man page |
| transect | Man page |
| transectID | Man page |
| transectID<- | Man page |
| transectX | Man page |
| transectlength | Man page |
| transformations | Man page |
| trap | Man page |
| trap.builder | Man page |
| trapXY | Man page |
| trappingcapped | Source code |
| trappingcount | Source code |
| trappingmulti | Source code |
| trappingpolygon | Source code |
| trappingpolygonX | Source code |
| trappingproximity | Source code |
| trappingsignal | Source code |
| trappingsingle | Source code |
| trappingtelemetry | Source code |
| trappingtransect | Source code |
| trappingtransectX | Source code |
| traps | Man page |
| traps object | Man page |
| traps<- | Man page |
| trapsPerAnimal | Man page |
| trim | Man page |
| trim.default | Man page |
| trim.secr | Man page |
| trim.secrlist | Man page |
| turnover | Man page |
| unRMarkInput | Man page Source code |
| unjoin | Man page |
| updateCH | Man page |
| usage | Man page |
| usage.traps | Man page |
| usage<- | Man page |
| usagePlot | Man page Source code |
| userdist | Man page |
| valid.model | Source code |
| var.in.model | Source code |
| vcov.secr | Man page |
| verify | Man page |
| verify.capthist | Man page |
| verify.default | Man page |
| verify.mask | Man page |
| verify.traps | Man page |
| version5 | Man page |
| write.DA | Man page |
| write.SPACECAP | Man page |
| write.capthist | Man page |
| write.captures | Man page |
| write.mask | Man page |
| write.traps | Man page |
| writeGPS | Man page |
| xy | Man page |
| xy2CH | Man page |
| xy<- | Man page |
| xydist2cpp | Source code |
