API for secr
Spatially Explicit Capture-Recapture

Global functions
AIC.secr Man page Source code
AIC.secrlist Man page Source code
ANN Source code
ARL Man page Source code
BSS Source code
CG Source code
CHN Source code
CLN Source code
CLdensity Source code
CLgradient Source code
CLmeanesa Source code
CN Source code
CV Man page Source code
CVa Man page Source code
CVa0 Man page Source code
Coulombe Man page
D.designdata Man page Source code
Detection functions Man page
Dsurface Man page
Dsurface-class Man page
Dsurface.as.data.frame Source code
ESG.0 Man page
ESG.b Man page
ESG.h2 Man page
ESG.t Man page
EX Source code
FAQ Man page
HAN Source code
HCG Source code
HEX Source code
HHN Source code
HHR Source code
HN Source code
HR Source code
LLonly Man page
LLsurface.secr Man page Source code
LN.interval Source code
LR.test Man page Source code
LStraps Man page
M0 Source code
MATA Source code
MMDM Man page Source code
MRtraps Source code
MS.capthist Man page Source code
Mb Source code
Mh Source code
Mh2.est Source code
Mhbeta.est Source code
Mtnegloglik Source code
Multi-core processing Man page
N.Mt Source code
OVpossum Man page
OVpossumCH Man page
PG Man page Source code
Parallel Man page
RMarkInput Man page Source code
RPSV Man page Source code
RPSVxy Source code
Rsurface Man page Source code
Rsurface.as.data.frame Source code
SN Source code
SNS Source code
SS Source code
SSS Source code
Speed tips Man page
Tm Man page Source code
Tm.default Source code
Tm<- Man page
Tn Man page Source code
Tn.default Source code
Tn<- Man page
Troubleshooting Man page
Tu Man page Source code
Tu.default Source code
Tu<- Man page
UN Source code
WEX Source code
WSG.0 Man page
WSG.b Man page
WSG.h2 Man page
WSG.t Man page
Xtransform Source code
Xuntransform Source code
[.secrlist Man page
add.cl Source code
addCovariates Man page Source code
addSightings Man page Source code
addTelemetry Man page Source code
addzeroCH Source code
addzerodf Source code
alive Man page Source code
allzero Source code
alongtransect Man page Source code
animalID Man page Source code
as.data.frame Man page
as.data.frame.capthist Man page Source code
as.data.frame.traps Man page Source code
as.mask Man page Source code
attenuationplot Man page Source code
autoini Man page Source code
badsmooths Source code
bias.D Man page Source code
binomN Man page
bisect Source code
boundarytoSP Source code
boundarytoSPDF Source code
bubble.legend Source code
buffer.contour Man page Source code
bufferbiascheck Source code
c.secrlist Source code
capped Man page
captXY Man page
captdata Man page
capthist Man page
cellPointsInPolygon Source code
chao.est Source code
chao.th1.est Source code
chao.th2.est Source code
chaomod.est Source code
check3D Source code
checkcovariatelevels Source code
circular.p Man page Source code
circular.r Man page Source code
clean.mlogit Source code
clip.hex Man page Source code
clone Man page Source code
clone.capthist Man page Source code
clone.default Man page Source code
clone.popn Man page Source code
closedN Man page Source code
closure.test Man page Source code
cluster Man page
cluster.centres Man page Source code
cluster.counts Man page Source code
clusterID Man page Source code Source code
clusterID.default Source code
clusterID<- Man page
clustertrap Man page Source code Source code
clustertrap.default Source code
clustertrap<- Man page
coef.secr Man page Source code
collapseocc Source code
collate Man page Source code
complete.beta Source code
complete.beta.vcv Source code
confint.secr Man page Source code
count Man page
counts Man page Source code
covariates Man page Source code
covariates.default Source code
covariates<- Man page
darr.est.c Source code
dbar Man page Source code
deermouse Man page
deermouse.ESG Man page
deermouse.WSG Man page
deleteMaskPoints Man page Source code
derived Man page Source code
derived.secr Man page Source code
derived.secrlist Man page Source code
derived.stratified Source code
derivedCluster Man page Source code
derivedExternal Man page Source code
derivedMash Man page Source code
derivedSession Man page Source code
derivednj Man page Source code
designmatrix Source code
details Man page
detectfn Man page
detectfnplot Man page Source code
detectionfunctionname Source code
detectionfunctionnumber Source code
detectionindex Source code
detector Man page Source code
detector.default Source code
detector<- Man page
detectorcode Source code
detectpar Man page Source code
detectpar.default Source code
detectpar.secr Man page Source code
deviance Man page
deviance.secr Man page Source code
df.residual Man page
df.residual.secr Man page Source code
discreteN Source code
discretize Man page Source code
disinteraction Source code
distances Source code
distancetotrap Man page Source code
edist Man page Source code
effort Man page
ellipse.bvn Man page Source code
ellipse.secr Man page Source code
empirical.varD Man page
esa Man page Source code
esa.plot Man page Source code
esa.plot.secr Man page Source code
esagradient Source code
expandbinomN Source code
expanddet Source code
expands Source code
expandsk Source code
expected.n Man page Source code
extract.estimates Source code
fixed.string Source code
fixedbeta Man page
fixpmix Source code
flatten Source code
flip Man page Source code
flip.default Source code
flip.popn Man page Source code
flip.traps Man page Source code
fullbeta Source code
fx.total Man page Source code
fxi Man page
fxi.contour Man page Source code
fxi.mode Man page Source code
fxi.secr Man page Source code
fxi2SPDF Source code
gamsetup Source code
general.model.matrix Source code
get.nmix Source code
getCentres Source code
getD Source code
getDensityArray Source code
getMeanSD Man page Source code
getbinomN Source code
getcellsize Source code
getcoord Source code
getdfn Source code
getgrpnum Source code
getknownclass Source code
getnmix Source code
getuserdistnames Source code
gradient Source code
group.factor Source code
group.levels Source code
h.levels Source code
hcov Man page
hdot Source code
head.Dsurface Man page Source code
head.capthist Man page Source code
head.mask Man page Source code
head.traps Man page Source code
hexagon Source code
hornedlizard Man page
hornedlizardCH Man page
housemouse Man page
housemouse.0 Man page
housemouse.ampm Man page
housemouse.ampmh2h2 Man page
inflate Source code
inflatechull Source code
infraCH Man page
insertdim Source code
invlogit Man page Source code
invodds Source code
invsine Source code
ip.secr Man page Source code
is.wholenumber Source code
jack.est Source code
jackknife.est Source code
join Man page Source code
leadingzero Source code
lineoCH Man page
lnbinomial Source code
localvar Source code
logLik.secr Man page Source code
logit Man page Source code
logmultinom Man page Source code
make.capthist Man page Source code
make.circle Man page Source code
make.grid Man page Source code
make.hex Man page Source code
make.lookup Man page Source code
make.mask Man page Source code
make.poly Man page Source code
make.systematic Man page Source code
make.telemetry Man page Source code
make.transect Man page Source code
make.tri Man page Source code
makerealparameters Source code
mapbeta Source code
markocc Man page Source code
markocc.default Source code
markocc<- Man page
markresight Source code
mash Man page Source code
mask Man page
mask-class Man page
mask.check Man page Source code
maskarea Man page Source code
masklength Man page Source code
memo Source code
merge.capthist Source code
mindistfromedge Source code
miscparm Man page
mlogit Source code
mlogit.untransform Source code
model.average Man page Source code
model.string Source code
morning.0 Man page
morning.0h2 Man page
morning.b Man page
morning.h2 Man page
morning.h2h2 Man page
morning.t Man page
moves Man page Source code
ms Man page Source code
ms.default Man page Source code
ms.mask Man page Source code
ms.secr Man page Source code
ms.secrtest Source code
multi Man page
n.occasion Source code
naivesigma Source code
nclusters Source code
ncores Man page
ndetector Source code
ndetectpar Source code
nearesttrap Man page Source code
nedist Man page Source code
negloglikM0 Source code
negloglikMb Source code
new.param Source code
newstr Source code
noise Man page Source code
noise.capthist Man page Source code
noise.default Source code
noise<- Man page
noneuc Man page
nparameters Source code
null.est.c Source code
occasion Man page Source code
occasionKey Man page Source code
odds Source code
onAttach Source code
oneline.secr Source code
outsidemask Source code
ovenCH Man page
ovenCHp Man page
ovenbird Man page
ovenbird.model.1 Man page
ovenbird.model.1T Man page
ovenbird.model.1b Man page
ovenbird.model.D Man page
ovenbird.model.h2 Man page
ovenmask Man page
ovensong Man page
ovensong.model.1 Man page
ovensong.model.2 Man page
overlapcells Source code
overlappoly Source code
pad1 Source code
padarray Source code
par.derived Man page Source code
par.region.N Man page Source code
par.secr.fit Man page Source code
param Man page
parnames Source code
pdot Man page Source code
pdot.contour Man page Source code
pfn Man page Source code
pfnold Source code
plot.Dsurface Man page Source code
plot.Rsurface Man page Source code
plot.capthist Man page Source code
plot.mask Man page Source code
plot.popn Man page Source code
plot.secr Man page Source code
plot.secrlist Man page Source code
plot.secrtest Man page Source code
plot.traps Man page Source code
plotMCP Man page Source code
plotMaskEdge Man page Source code
plotMaskEdgeOld Source code
pmixProfileLL Man page Source code
pointsInPolygon Man page Source code
poly2point Source code
polyID Man page Source code
polyID<- Man page
polyarea Man page Source code
polygon Man page
polygonX Man page
polys Source code
popn Man page
population size Man page
possum Man page
possum.model.0 Man page
possum.model.D Man page
possum.model.Ds Man page
possum.model.b Man page
possum.model.h2 Man page
possumCH Man page
possumarea Man page
possummask Man page
possumremovalarea Man page
predict.secr Man page Source code
predict.secrlist Man page Source code
predictD Source code
predictDsurface Man page Source code
prepare Source code
print.Dsurface Man page Source code
print.Rsurface Source code
print.capthist Man page Source code
print.secr Man page Source code
print.secrdata Source code
print.secrlist Source code
print.secrtest Man page Source code
print.summary.capthist Man page Source code
print.summary.mask Man page Source code
print.summary.traps Man page Source code
print.traps Man page Source code
proximity Man page
random numbers Man page
randomHabitat Man page Source code
raster Man page
raster,Dsurface-method Man page
raster,mask-method Man page
rbind.capthist Man page Source code
rbind.mask Man page Source code
rbind.popn Man page Source code
rbind.traps Man page Source code
read.DA Man page Source code
read.SPACECAP Man page Source code
read.capthist Man page Source code
read.mask Man page Source code
read.telemetry Man page Source code
read.traps Man page Source code
rectangularMask Man page Source code
reduce Man page Source code
reduce.capthist Man page Source code
reduce.default Man page Source code
reduce.traps Man page Source code
refreshMCP Source code
region.N Man page Source code
region.N.secr Man page Source code
region.N.secrlist Man page Source code
renamepolyrows Source code
rep.capthist Source code
reparameterize Source code
reparameterize.a0 Source code
reparameterize.esa Source code
reparameterize.sigmak Source code
replacedefaults Source code
ringID Source code
rotate Man page Source code
rotate.default Source code
rotate.popn Man page Source code
rotate.traps Man page Source code
score.table Man page Source code
score.test Man page Source code
se.Xtransform Source code
se.Xuntransform Source code
se.untransform Source code
searcharea Man page Source code
searcharea<- Man page
secr Man page
secr density models Man page
secr detection models Man page
secr models Man page
secr-package Man page
secr.design.MS Man page Source code
secr.fit Man page Source code
secr.loglikfn Source code
secr.lpredictor Source code
secr.make.newdata Man page Source code
secr.model Man page
secr.model.density Man page
secr.model.detection Man page
secr.test Man page Source code
secrRNG Man page
secrdemo Man page
secrdemo.0 Man page
secrdemo.CL Man page
secrdemo.b Man page
secrlist Man page Source code
secrtest Man page
seed Man page
session Man page Source code
session.default Source code
session<- Man page
shareFactorLevels Man page Source code
shift Man page Source code
shift.default Source code
shift.mask Man page Source code
shift.popn Man page Source code
shift.traps Man page Source code
sighting Man page Source code
sighting.chat Source code
sightingPlot Man page Source code
sightings Man page
signal Man page Man page Source code
signal.capthist Man page Source code
signal.default Source code
signal<- Man page
signalCH Man page
signalframe Man page Source code
signalframe<- Man page
signalmatrix Man page Source code
sim.capthist Man page Source code
sim.detect Man page Source code
sim.popn Man page Source code
sim.resight Man page Source code
sim.secr Man page Source code
simulate Man page
simulate.secr Man page Source code
sine Source code
single Man page
skink Man page
slice Source code
smooths Man page Source code
snip Man page Source code
sort.capthist Man page Source code
sort.mask Man page Source code
spacing Man page Source code
spacing.default Source code
spacing.mask Man page Source code
spacing.traps Man page Source code
spacing<- Man page
spatialscale Source code
speed Man page
split.by Source code
split.capthist Man page Source code
split.traps Man page Source code
spotHeight Man page Source code
stdform Source code
stoat.model.EX Man page
stoat.model.HN Man page
stoat.model.HZ Man page
stoatCH Man page
stoatDNA Man page
strip.legend Man page Source code
subset.capthist Man page Source code
subset.mask Man page Source code
subset.popn Man page Source code
subset.traps Man page Source code
suggest.buffer Man page Source code
sumDpdot Source code
summary.Dsurface Man page Source code
summary.capthist Man page Source code
summary.mask Man page Source code
summary.traps Man page Source code
tail.Dsurface Man page Source code
tail.capthist Man page Source code
tail.mask Man page Source code
tail.traps Man page Source code
telemetered Man page Source code
telemetry.LC Source code
telemetry.LCmask Source code
telemetry.LT Source code
telemetrytype Man page Source code
telemetrytype.default Source code
telemetrytype<- Man page
telemetryxy Man page Source code
telemetryxy<- Man page
tile Man page Source code
timevaryingcov Man page Source code
timevaryingcov.default Source code
timevaryingcov<- Man page
toroidal.wrap Source code
transect Man page
transect2point Source code
transectID Man page Source code
transectID<- Man page
transectX Man page
transectlength Man page Source code
transform Source code
transformations Man page
trap Man page Source code
trap.builder Man page Source code
trapXY Man page
trapmerge Source code
traps Man page Source code
traps object Man page
traps.default Source code
traps<- Man page
trim Man page Source code
trim.default Man page Source code
trim.secr Man page Source code
turnover Man page
unRMarkInput Man page Source code
unjoin Man page Source code
untransform Source code
updateCH Man page Source code
updatemodel Source code
usage Man page Source code
usage.default Source code
usage<- Man page
usagePlot Man page Source code
userD Source code
userdist Man page
valid.detectfn Source code
valid.detectpar Source code
valid.model Source code
valid.pnames Source code
valid.userdist Source code
validpoly Source code
var.in.model Source code
vcov.secr Man page Source code
verify Man page Source code
verify.capthist Man page Source code
verify.default Man page Source code
verify.mask Man page Source code
verify.traps Man page Source code
write.DA Man page Source code
write.SPACECAP Man page Source code
write.capthist Man page Source code
write.captures Man page Source code
write.traps Man page Source code
writeGPS Man page Source code
xy Man page Source code
xy2CH Man page Source code
xy<- Man page
xyinpoly Source code
xyontransect Source code
zip.est.c Source code
secr documentation built on Dec. 3, 2017, 5:03 p.m.