API for secr
Spatially Explicit Capture-Recapture

Global functions
AIC.secr Man page
AIC.secrlist Man page
AICcompatible Man page
AICcompatible.secr Man page Source code
AICcompatible.secrlist Man page Source code
ARL Man page
CV Man page
CVa Man page
CVa0 Man page
CVpdot Man page
Coulombe Man page
D.designdata Man page
Detection functions Man page
Dsurface Man page
Dsurface-class Man page
FAQ Man page
LLonly Man page
LLsurface Man page
LLsurface.secr Man page
LR.test Man page
LStraps Man page
MMDM Man page
MS.capthist Man page
Multi-core processing Man page
ORL Man page
OVpossum Man page
OVpossumCH Man page
PG Man page
Parallel Man page
RMarkInput Man page
RPSV Man page
RSE Man page
Rsurface Man page
Speed tips Man page
Tm Man page
Tm<- Man page
Tn Man page
Tn<- Man page
Troubleshooting Man page
Tsightinglikcpp Source code
Tu Man page
Tu<- Man page
[.secrlist Man page
addCovariates Man page
addSightings Man page
addTelemetry Man page
alive Man page
alongtransect Man page
alongtransectcpp Source code
animalID Man page
as.data.frame Man page
as.data.frame.capthist Man page
as.data.frame.traps Man page
as.mask Man page
attenuationplot Man page
autoini Man page
bias.D Man page
binomN Man page
bisect Source code
buffer.contour Man page
c.secrlist Source code
capped Man page
cappedgkhkcpp Source code
captXY Man page
captdata Man page
capthist Man page
centroids Man page
circular.p Man page
circular.r Man page
clean.mlogit Source code
clip.hex Man page
clone Man page
clone.capthist Man page
clone.default Man page
clone.popn Man page
closedN Man page
closure.test Man page
cluster Man page
cluster.centres Man page
cluster.counts Man page
clusterID Man page
clusterID<- Man page
clustertrap Man page
clustertrap<- Man page
coef.secr Man page
collate Man page
confint.secr Man page
count Man page
counts Man page
covariates Man page
covariates<- Man page
dbar Man page
deermouse Man page
deermouse.ESG Man page
deermouse.WSG Man page
deleteMaskPoints Man page
derived Man page
derived.secr Man page
derived.secrlist Man page
derivedCluster Man page
derivedExternal Man page
derivedMash Man page
derivedSession Man page
derivedSystematic Man page
derivednj Man page
details Man page
detectfn Man page
detectfnplot Man page
detector Man page
detector<- Man page
detectpar Man page
detectpar.default Source code
detectpar.secr Man page Source code
deviance Man page
deviance.secr Man page
df.residual Man page
df.residual.secr Man page
discretize Man page
distancetotrap Man page
edist Man page
edist2cpp Source code
effort Man page
ellipse.bvn Man page
ellipse.secr Man page
empirical.varD Man page
esa Man page
esa.plot Man page
esa.plot.secr Man page
expanddet Source code
expected.n Man page
expectedmucpp Source code
extractMoves Man page
fasthistoriescpp Source code
fixedbeta Man page
fixpmix Source code
flatten Source code
flip Man page
flip.popn Man page
flip.traps Man page
fx.total Man page
fxi Man page
fxi.contour Man page
fxi.mode Man page
fxi.secr Man page
gamsetup Source code
getMeanSD Man page Source code
getcoord Source code
getdenomcpp Source code
gethcpp Source code
gethr Source code
getk Source code
getknownclass Source code
getmaskpar Source code
getmiscparm Source code
getpID Source code
getpmix Source code
getpmixall Source code
getxy Source code
hcov Man page
hdotpolycpp Source code
head.Dsurface Man page
head.capthist Man page
head.mask Man page
head.traps Man page
hornedlizard Man page
hornedlizardCH Man page
housemouse Man page
infraCH Man page
insertdim Man page
insidecpp Source code
intervals Man page
intervals<- Man page
invlogit Man page
ip.secr Man page
is.wholenumber Source code
join Man page
lineoCH Man page
logLik.secr Man page Source code
logit Man page
logmultinom Man page
make.capthist Man page
make.circle Man page
make.grid Man page
make.hex Man page
make.lacework Man page
make.lookup Man page
make.mask Man page
make.poly Man page
make.systematic Man page
make.telemetry Man page
make.transect Man page
make.tri Man page
makeNewData Man page
makeNewData.default Man page
makeNewData.secr Man page
makegk Source code
makegkPointcpp Source code
makegkPolygoncpp Source code
makelookupcpp Source code
markocc Man page
markocc<- Man page
mash Man page Source code
mask Man page
mask-class Man page
mask.check Man page
maskarea Man page
masklength Man page
maxdistance Man page
miscparm Man page
model.average Man page
moves Man page
ms Man page
ms.default Man page
ms.mask Man page
ms.secr Man page
ms.secrtest Source code
multi Man page
naivecap3cpp Source code
naivedcpp Source code
ncores Man page
nearestcpp Source code
nearesttrap Man page
nedist Man page
newdata Man page
nk2 Source code
noise Man page
noise.capthist Man page
noise.default Source code
noise<- Man page
noneuc Man page
occasion Man page
occasionKey Man page
ontransectcpp Source code
ovenCH Man page
ovenCHp Man page
ovenbird Man page
ovenbird.model.1 Man page
ovenbird.model.D Man page
ovenmask Man page
ovensong Man page
ovensong.model.1 Man page
ovensong.model.2 Man page
par.derived Man page
par.region.N Man page
par.secr.fit Man page
param Man page
pdot Man page
pdot.contour Man page
pdotpointcpp Source code
pfn Man page
plot.Dsurface Man page
plot.Rsurface Man page
plot.capthist Man page Source code
plot.mask Man page Source code
plot.popn Man page
plot.secr Man page
plot.secrlist Man page
plot.secrtest Man page Source code
plot.traps Man page Source code
plotMCP Man page Source code
plotMaskEdge Man page
pmixProfileLL Man page
pointsInPolygon Man page
polyID Man page
polyID<- Man page
polyarea Man page
polygon Man page
polygonX Man page
polygonfxicpp Source code
polygonhistoriescpp Source code
popn Man page
population size Man page
possum Man page
possum.model.0 Man page
possum.model.Ds Man page
possumCH Man page
possumarea Man page
possummask Man page
possumremovalarea Man page
predict.secr Man page
predict.secrlist Man page
predictDsurface Man page
print.Dsurface Man page
print.capthist Man page
print.secr Man page
print.secrdata Source code
print.secrlist Source code
print.secrtest Man page
print.summary.capthist Man page
print.summary.mask Man page
print.summary.popn Man page
print.summary.traps Man page
print.traps Man page Source code
proj Source code
proximity Man page
random numbers Man page
randomHabitat Man page
raster Man page
raster,Dsurface-method Man page
raster,mask-method Man page
rbind.capthist Man page
rbind.mask Man page
rbind.popn Man page
rbind.traps Man page
read.DA Man page
read.capthist Man page
read.mask Man page
read.telemetry Man page
read.traps Man page
rectangularMask Man page
reduce Man page
reduce.capthist Man page
reduce.default Man page
reduce.traps Man page
region.N Man page
region.N.secr Man page
region.N.secrlist Man page
rotate Man page
rotate.capthist Source code
rotate.popn Man page
rotate.traps Man page
score.table Man page
score.test Man page
searcharea Man page
searcharea<- Man page
secr Man page
secr-package Man page
secr.design.MS Man page
secr.fit Man page
secr.test Man page
secrRNG Man page
secrdemo Man page
secrdemo.0 Man page
secrdemo.CL Man page
secrdemo.b Man page
secrlist Man page Source code
secrtest Man page
seed Man page
session Man page
session<- Man page
sessionlabels Man page
sessionlabels<- Man page
setNumThreads Man page
shareFactorLevels Man page
shift Man page
shift.mask Man page
shift.popn Man page
shift.traps Man page
sighting Man page Source code
sightingPlot Man page
sightingchatcpp Source code
sightings Man page
signal Man page Man page
signal.capthist Man page
signal.default Source code
signal<- Man page
signalCH Man page
signalframe Man page
signalframe<- Man page
signalhistoriescpp Source code
signalmatrix Man page
sim.capthist Man page
sim.detect Man page
sim.popn Man page
sim.resight Man page
sim.secr Man page
simdetectpointcpp Source code
simdetectpolycpp Source code
simdetectsignalcpp Source code
simplehistoriescpp Source code
simplehistoriesfxicpp Source code
simulate Man page
simulate.secr Man page
single Man page
skink Man page
smooths Man page
snip Man page
sort.capthist Man page
sort.mask Man page
spacing Man page
spacing.mask Man page
spacing.traps Man page
spacing<- Man page
speed Man page
split.capthist Man page
split.mask Man page
split.traps Man page
spotHeight Man page
stoat.model.EX Man page
stoat.model.HN Man page
stoatCH Man page
stoatDNA Man page
strip.legend Man page
subset.capthist Man page
subset.mask Man page
subset.popn Man page
subset.traps Man page
suggest.buffer Man page
summary.Dsurface Man page
summary.capthist Man page Source code
summary.mask Man page Source code
summary.popn Man page Source code
summary.secr Man page
summary.traps Man page Source code
tail.Dsurface Man page
tail.capthist Man page
tail.mask Man page
tail.traps Man page
telemetered Man page
telemetry.LC Source code
telemetry.LCmask Source code
telemetry.LT Source code
telemetrytype Man page
telemetrytype<- Man page
telemetryxy Man page
telemetryxy<- Man page
tile Man page
timevaryingcov Man page
timevaryingcov<- Man page
transect Man page
transectID Man page
transectID<- Man page
transectX Man page
transectlength Man page
transformations Man page
trap Man page
trap.builder Man page
trapXY Man page
trappingcapped Source code
trappingcount Source code
trappingmulti Source code
trappingpolygon Source code
trappingpolygonX Source code
trappingproximity Source code
trappingsignal Source code
trappingsingle Source code
trappingtelemetry Source code
trappingtransect Source code
trappingtransectX Source code
traps Man page
traps object Man page
traps<- Man page
trim Man page
trim.default Man page
trim.secr Man page
turnover Man page
unRMarkInput Man page Source code
unjoin Man page
updateCH Man page
usage Man page
usage<- Man page
usagePlot Man page Source code
userdist Man page
valid.model Source code
var.in.model Source code
vcov.secr Man page
verify Man page
verify.capthist Man page
verify.default Man page
verify.mask Man page
verify.traps Man page
write.DA Man page
write.capthist Man page
write.captures Man page
write.mask Man page
write.traps Man page
writeGPS Man page
xy Man page
xy2CH Man page
xy<- Man page
xydist2cpp Source code
secr documentation built on July 12, 2021, 9:07 a.m.