cla_id_paramPos: Parameter structure setting for cla_secsse It sets the...
In secsse: Several Examined and Concealed States-Dependent Speciation and Extinction
cla_id_paramPos R Documentation
Parameter structure setting for cla_secsse
It sets the parameters (speciation, extinction and transition)
IDs. Needed for ML calculation with cladogenetic options (cla_secsse_ml)
Description
Parameter structure setting for cla_secsse
It sets the parameters (speciation, extinction and transition)
IDs. Needed for ML calculation with cladogenetic options (cla_secsse_ml)
Usage
cla_id_paramPos(traits, num_concealed_states)
Arguments
traits
vector with trait states for each tip in the phylogeny. The
order of the states must be the same as the tree tips. For help, see
vignette("starting_secsse", package = "secsse").
num_concealed_states
number of concealed states, generally equivalent
to the number of examined states in the dataset.
Value
A list that includes the ids of the parameters for ML analysis.
Examples
traits <- sample(c(0,1,2), 45,replace = TRUE) #get some traits
num_concealed_states <- 3
param_posit <- cla_id_paramPos(traits, num_concealed_states)
secsse documentation built on Oct. 22, 2023, 1:13 a.m.
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| cla_id_paramPos | R Documentation |
Parameter structure setting for cla_secsse It sets the parameters (speciation, extinction and transition) IDs. Needed for ML calculation with cladogenetic options (cla_secsse_ml)
Description
Parameter structure setting for cla_secsse It sets the parameters (speciation, extinction and transition) IDs. Needed for ML calculation with cladogenetic options (cla_secsse_ml)
Usage
cla_id_paramPos(traits, num_concealed_states)
Arguments
traits |
vector with trait states for each tip in the phylogeny. The
order of the states must be the same as the tree tips. For help, see
|
num_concealed_states |
number of concealed states, generally equivalent to the number of examined states in the dataset. |
Value
A list that includes the ids of the parameters for ML analysis.
Examples
traits <- sample(c(0,1,2), 45,replace = TRUE) #get some traits
num_concealed_states <- 3
param_posit <- cla_id_paramPos(traits, num_concealed_states)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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