sortingtraits: Data checking and trait sorting In preparation for likelihood...

In secsse: Several Examined and Concealed States-Dependent Speciation and Extinction

Data checking and trait sorting In preparation for likelihood calculation, it orders trait data according the tree tips

Description

Data checking and trait sorting In preparation for likelihood calculation, it orders trait data according the tree tips

Usage

sortingtraits(trait_info, phy)

Arguments

trait_info	data frame where first column has species ids and the second one is the trait associated information.
phy	phylogenetic tree of class phylo, rooted and with branch lengths.

Value

Vector of traits

Examples

# Some data we have prepared
data(traits)
data('phylo_vignette')
traits <- sortingtraits(traits, phylo_vignette)

secsse documentation built on Oct. 22, 2023, 1:13 a.m.