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## Copyright (c) 2014, Pioneer Hi-Bred International, Inc.
## Redistribution and use in source and binary forms, with or without
## modification, are permitted provided that the following conditions are
## met:
## Redistributions of source code must retain the above copyright
## notice, this list of conditions and the following disclaimer.
## Redistributions in binary form must reproduce the above copyright
## notice, this list of conditions and the following disclaimer in
## the documentation and/or other materials provided with the
## distribution.
## Neither the name of Pioneer Hi-Bred International, Inc. nor the
## names of its contributors may be used to endorse or promote
## products derived from this software without specific prior written
## permission.
## THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
## "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
## LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
## A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT
## HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
## SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
## LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
## DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
## THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
## (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
## OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
globalVariables(c('i','j','k','l','m'))
nodeProbabilities <- function(F,generation){
prob.list <- list()
prob.list[["F2"]] <- extractProbs(F)
## F3
if(generation > 2){
F2 <- extractProbs(F)
prob.list[["F3"]] <- foreach(i = 1:length(F2),.combine = "c") %do% {
F3 <- extractProbs(F[[i]][[3]])
prob.temp <- paste(F2[[i]],"*",F3)
names(prob.temp) <- names(F3)
return(prob.temp)
}
}
## F4
if(generation > 3){
F2 <- extractProbs(F)
prob.list[["F4"]] <- foreach(i = 1:length(F2),.combine = "c") %do% {
F3 <- extractProbs(F[[i]][[3]])
F4.temp <- foreach(j = 1:length(F3),.combine = "c") %do% {
F4 <- extractProbs(F[[i]][[3]][[j]][[3]])
prob.temp <- paste(F2[[i]],"*",
F3[[j]],"*",
F4)
names(prob.temp) <- names(F4)
return(prob.temp)
}
return(F4.temp)
}
}
## F5
if(generation > 4){
F2 <- extractProbs(F)
prob.list[["F5"]] <- foreach(i = 1:length(F2),.combine = "c") %do% {
F3 <- extractProbs(F[[i]][[3]])
F4.temp <- foreach(j = 1:length(F3),.combine = "c") %do% {
F4 <- extractProbs(F[[i]][[3]][[j]][[3]])
F5.temp <- foreach(k = 1:length(F4),.combine = "c") %do% {
F5 <- extractProbs(F[[i]][[3]][[j]][[3]][[k]][[3]])
prob.temp <- paste(F2[[i]],"*",
F3[[j]],"*",
F4[[k]],"*",
F5)
names(prob.temp) <- names(F5)
return(prob.temp)
}
return(F5.temp)
}
return(F4.temp)
}
}
## F6
if(generation > 5){
F2 <- extractProbs(F)
prob.list[["F6"]] <- foreach(i = 1:length(F2),.combine = "c") %do% {
F3 <- extractProbs(F[[i]][[3]])
F4.temp <- foreach(j = 1:length(F3),.combine = "c") %do% {
F4 <- extractProbs(F[[i]][[3]][[j]][[3]])
F5.temp <- foreach(k = 1:length(F4),.combine = "c") %do% {
F5 <- extractProbs(F[[i]][[3]][[j]][[3]][[k]][[3]])
F6.temp <- foreach(l = 1:length(F5),.combine = "c") %do% {
F6 <- extractProbs(F[[i]][[3]][[j]][[3]][[k]][[3]][[l]][[3]])
prob.temp <- paste(F2[[i]],"*",
F3[[j]],"*",
F4[[k]],"*",
F5[[l]],"*",
F6)
names(prob.temp) <- names(F6)
return(prob.temp)
}
return(F6.temp)
}
return(F5.temp)
}
return(F4.temp)
}
}
## F7
if(generation > 6){
F2 <- extractProbs(F)
prob.list[["F7"]] <- foreach(i = 1:length(F2),.combine = "c") %do% {
F3 <- extractProbs(F[[i]][[3]])
F4.temp <- foreach(j = 1:length(F3),.combine = "c") %do% {
F4 <- extractProbs(F[[i]][[3]][[j]][[3]])
F5.temp <- foreach(k = 1:length(F4),.combine = "c") %do% {
F5 <- extractProbs(F[[i]][[3]][[j]][[3]][[k]][[3]])
F6.temp <- foreach(l = 1:length(F5),.combine = "c") %do% {
F6 <- extractProbs(F[[i]][[3]][[j]][[3]][[k]][[3]][[l]][[3]])
F7.temp <- foreach(m = 1:length(F6),.combine = "c") %do% {
F7 <- extractProbs(F[[i]][[3]][[j]][[3]][[k]][[3]][[l]][[3]][[m]][[3]])
prob.temp <- paste(F2[[i]],"*",
F3[[j]],"*",
F4[[k]],"*",
F5[[l]],"*",
F6[[m]],"*",
F7)
names(prob.temp) <- names(F7)
return(prob.temp)
}
return(F7.temp)
}
return(F6.temp)
}
return(F5.temp)
}
return(F4.temp)
}
}
return(prob.list)
}
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