seqCBS: CN Profiling using Sequencing and CBS
Version 1.2

This is a method for DNA Copy Number Profiling using Next-Generation Sequencing. It has new model and test statistics based on non-homogeneous Poisson Processes with change point models. It uses an adaptation of Circular Binary Segmentation. Also included are methods for point-wise Bayesian Confidence Interval and model selection method for the change-point model. A case and a control sample reads (normal and tumor) are required.

Package details

AuthorJeremy J. Shen, Nancy R. Zhang
Date of publication2012-10-29 08:59:40
MaintainerJeremy J. Shen <jeremyjshen@gmail.com>
LicenseGPL-2
Version1.2
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("seqCBS")

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seqCBS documentation built on May 29, 2017, 1:09 p.m.