ScanBIC: Compute the modified BIC for change-point models
In seqCBS: Copy Number Profiling using Sequencing and CBS

This computes mBIC for the current change point model. We then use this to determine the appropriate model complexity.

1	ScanBIC(combX, combZ, tauHat, lik0, nTotal)

`combX`	The number of reads at each unique read position
`combZ`	The number of case/tumor reads at each unique read position
`tauHat`	The change points called
`lik0`	The null likelihood. Computed in the main routine.
`nTotal`	The total number of reads

This is meanted to be called as a subrountine of ScanCBS

Returns a numerical value of mBIC for the current model

Jeremy J. Shen

seqCBS documentation built on May 2, 2019, 9:15 a.m.

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