CombineCaseControlC: Combine case and control reads
In seqCBS: Copy Number Profiling using Sequencing and CBS

Combine the case and control reads; finds the unique read positions and count the number of case and control reads.

1	CombineCaseControlC(cases, controls)

`cases`	A vector of numeric read positions from case sample
`controls`	A vector of numeric read positions from control sample

A few C functions are used for efficient implementation

`combX`	Number of total reads at read position
`combZ`	Number of case reads at read position
`combL`	Vector of unique read positions

Jeremy J. Shen

seqCBS documentation built on May 2, 2019, 9:15 a.m.

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