getCountsInWindow: Get number of reads in fixed-width window

In seqCBS: Copy Number Profiling using Sequencing and CBS

Description

Computes the number of reads for each fixed-width window between two limits

Usage

getCountsInWindow(events, startE, endE, windowSize = 10000, sorted = FALSE)

Arguments

events	A vector of the read positions
startE	Left limit
endE	Right Limit
windowSize	Size of the window
sorted	Whether events is sorted, default F

Details

Uses hist() function

Value

A vector of counts for each window

Author(s)

Jeremy J. Shen

See Also

ScanCBS

Examples

	getCountsInWindow(sample(1:10000, 3000, replace=TRUE), 0, 10000, 100, FALSE)

seqCBS documentation built on May 2, 2019, 9:15 a.m.