Description Usage Arguments Details Value Author(s) See Also

View source: R/nhppRateEstimate.R

Given a vector of point events, give a rough estimate of the rate of underlying non-homogeneous Poisson process by window and smoothing

1 | ```
nhppRateEstimate(controls, length.out = floor(length(controls)/20), lowessF = 0.1)
``` |

`controls` |
A vector of point locations (read positions) of a control sample for which the rate is wanted |

`length.out` |
The number of windows to be used for the rate estimate vector; default to be number of observations/100 |

`lowessF` |
Smoothing factor for the lowess smoothing of the windowed rates, describes the proportion of windows around a particular window that has influence on its smoothed rate estimate |

This is used to give a realistic estimate of the rate nhpp of control samples

Returns a vector of length `length.out`

that contains the smoothed rate estimate of each window

Jeremy J. Shen

seqCBS documentation built on May 29, 2017, 1:09 p.m.

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