Description Usage Arguments Details Value Note Author(s) References Examples
Generating reports of simulated RFLP cutting patterns.
1 |
fil |
sequence data in class fasta. |
enznames |
selected enzyme name from enzdata. |
enzdata |
a dataframe contained enzyme information. |
Given the name of restriction enzyme, the function will give the simulated RFLP pattern. The input sequences must be a fasta format object, which means it must be first converted to class "fasta". Users are encouraged to use read.fasta
, read.phy
, read.nxs
to read files from local machine, and converted the data to class fasta
using as.fasta
.
This function returns to a dataframe which including the following columns. with rownames the sequence name.
enznames |
enzyme name |
recogSite |
The recognition site of the specified enzyme. |
cutting_Site |
The cutting site number on the sequence from 5' to 3'. |
fragment_Length |
The length of each fragments from 5' to 3' |
T5 |
Length of the 5' terminal fragment from the original sequence. |
T3 |
Length of the 3' terminal fragment from the original sequence. |
To be added.
Qiong Ding dingqiong1@gmail.com
None.
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