API for seqmagick
Sequence Manipulation Utilities
| Global functions | |
|---|---|
| DNA_ambiguity_code | Source code |
| bam2DNAStringSet | Man page Source code |
| bam2DNAStringSet2 | Man page Source code |
| bs_aln | Man page Source code |
| bs_consensus | Man page Source code |
| bs_filter | Man page Source code |
| bs_hamming | Man page Source code |
| bs_rename | Man page Source code |
| build_seq_object | Source code |
| charVector_hamming | Source code |
| check_alnseq | Source code |
| clw_read | Man page |
| collapse_seqs | Source code |
| consensus | Man page Source code |
| download_genbank | Man page Source code |
| download_genbank_item | Source code |
| fa_combine | Man page Source code |
| fa_filter | Man page Source code |
| fa_read | Man page Source code |
| fa_rename | Man page Source code |
| fa_to_interleaved | Man page Source code |
| fa_to_sequential | Man page Source code |
| fa_write | Man page Source code |
| fa_write_interleaved | Source code |
| fa_write_sequential | Source code |
| fas2phy | Man page Source code |
| gb_read | Man page |
| getPhyInfo | Source code |
| get_first_token | Source code |
| get_id | Man page Source code |
| mega_format | Source code |
| mega_read | Man page Source code |
| mega_record | Source code |
| mega_record_no_format | Source code |
| parse_name_seq | Source code |
| phy2fas | Man page Source code |
| phy_read | Man page Source code |
| phy_write | Man page Source code |
| phy_write_interleaved | Source code |
| phy_write_sequential | Source code |
| renameTXT | Man page Source code |
| renameTXT_internal | Source code |
| replaceInside | Man page Source code |
| replaceInside.DNAStringSet | Source code |
| replaceInside.character | Source code |
| seqlen | Man page Source code |
| sth_read | Man page |
| str_hamming | Source code |
| tokenize | Source code |
