Files in serocalculator

Estimating Infection Rates from Serological Data

NEWS.md README.md R/tau-funcs.R R/nlm_exit_codes.R R/check_pop_data.R R/serocalculator-package.R R/f_dev.r R/autoplot.curve_params.R R/count_strata.R R/build_likelihood_function.R R/makeStrata.R R/as_curve_params.R R/summary.pop_data.R R/bt.R R/autoplot.pop_data.R R/print.summary.seroincidence.by.R R/load_noise_params.R R/print.seroincidence.R R/prep_curve_params_for_array.R R/graph.decay.curves.R R/df_to_array.R R/densFunc.R R/graph.loglik.R R/autoplot.seroincidence.by.R R/strata.seroincidence.ests.R R/sim.cs-utils.r R/log_likelihood.R R/deltaFunc.R R/get_curve_params_one_antigen.R R/est.incidence.by.R R/warn_missing_strata.R R/reexports.R R/load_pop_data.R R/simresp.tinf.R R/ltpar.R R/ab.R R/print.seroincidence.by.R R/est.incidence.R R/rho-funcs.R R/plot_resp.R R/surv.R R/example_typhoid_curves_nostrat.R R/example_noise_params_pk.R R/sees_pop_data_pakistan_100.R R/onUnload.R R/graph.curve.params.R R/summary.seroincidence.R R/check_strata.R R/ag.R R/autoplot.summary.seroincidence.by.R R/serocalculator_example.R R/noise_param_names.R R/simpar.R R/add_point_to_graph.R R/sim.cs.multi.R R/ab0.R R/stratify_data.R R/check_parallel_cores.R R/curve_param_names.R R/subset.seroincidence.ests.R R/load_curve_params.R R/as_pop_data.R R/nll.R R/as_noise_params.R R/par.pred.R R/set_biomarker_var.R R/class_attributes.R R/summary.seroincidence.by.R R/simcs.tinf.R R/autoplot.seroincidence.R R/sim.cs.R R/utils.R R/csdata_wide_to_long.R R/get_xspd_one_antigen.R tests/testthat.R tests/spelling.R tests/testthat/test-stratify_data.R tests/testthat/test-autoplot.pop_data.R tests/testthat/test-est.incidence.by.R tests/testthat/test-check_pop_data.R tests/testthat/test-log_likelihood.R tests/testthat/test-warn_missing_strata.R tests/testthat/test-class_attributes.R tests/testthat/test-f_dev.R tests/testthat/test-load_pop_data.R tests/testthat/test-est.incidence.R tests/testthat/test-df_to_array.R tests/testthat/test-ab0.R tests/testthat/test-set_biomarker_var.R tests/testthat/test-check_strata.R tests/testthat/test-summary.pop_data.R tests/testthat/test-as_curve_params.R tests/testthat/test-serocalculator_example.R tests/testthat/test-as_noise_params.R tests/testthat/test-plot_curve_params_one_ab.R tests/testthat/test-nll.R tests/testthat/_snaps/as_noise_params.md tests/testthat/_snaps/summary.pop_data.md tests/testthat/_snaps/as_curve_params.md tests/testthat/_snaps/stratify_data.md tests/testthat/_snaps/ab0.md tests/testthat/_snaps/class_attributes.md tests/testthat/_snaps/df_to_array.md tests/testthat/_snaps/est.incidence.md tests/testthat/_snaps/log_likelihood.md tests/testthat/_snaps/est.incidence.by.md tests/testthat/_snaps/f_dev.md man/row_longitudinal_parameter.Rd man/autoplot.seroincidence.Rd man/ldpar.Rd man/serocalculator.Rd man/summary.seroincidence.Rd man/df.to.array.Rd man/serocalculator_example.Rd man/print.seroincidence.by.Rd man/sees_pop_data_pk_100.Rd man/reexports.Rd man/load_curve_params.Rd man/print.seroincidence.Rd man/strata.seroincidence.by.Rd man/as_pop_data.Rd man/print.summary.seroincidence.by.Rd man/autoplot.pop_data.Rd man/ab.Rd man/est.incidence.Rd man/stratify_data.Rd man/sim.cs.multi.Rd man/graph.curve.params.Rd man/autoplot.seroincidence.by.Rd man/mkbaseline.Rd man/log_likelihood.Rd man/example_noise_params_pk.Rd man/graph_loglik.Rd man/sub-.seroincidence.by.Rd man/as_curve_params.Rd man/f_dev.Rd man/fdev.Rd man/load_pop_data.Rd man/strata.Rd man/warn.missing.strata.Rd man/llik.Rd man/est.incidence.by.Rd man/dot-nll.Rd man/load_noise_params.Rd man/summary.pop_data.Rd man/plot_curve_params_one_ab.Rd man/simresp.tinf.Rd man/f_dev0.Rd man/mk_baseline.Rd man/sees_pop_data_pk_100_old_names.Rd man/check_pop_data.Rd man/typhoid_curves_nostrat_100.Rd man/autoplot.curve_params.Rd man/sim.cs.Rd man/simcs.tinf.Rd man/autoplot.summary.seroincidence.by.Rd man/as_noise_params.Rd man/summary.seroincidence.by.Rd