Files in serofoi
Bayesian Estimation of the Force of Infection from Serological Data
configure
MD5
NEWS.md
README.md
NAMESPACE
DESCRIPTION
LICENSE
configure.win
R/stanmodels.R
R/chik2015.R
R/serofoi-package.R
R/fit_seromodel.R
R/veev2012.R
R/simulate_serosurvey.R
R/chagas2012.R
R/build_stan_data.R
R/summarise_seromodel.R
R/plot_seromodel.R
R/validation.R
src/stanExports_constant_seroreversion.cc
src/Makevars
src/stanExports_age_seroreversion.cc
src/stanExports_time_log_seroreversion.h
src/RcppExports.cpp
src/stanExports_age_no_seroreversion.cc
src/stanExports_constant_seroreversion.h
src/stanExports_age_seroreversion.h
src/stanExports_constant_no_seroreversion.h
src/stanExports_time_no_seroreversion.cc
src/stanExports_time_log_seroreversion.cc
src/stanExports_time_log_no_seroreversion.h
src/stanExports_constant_no_seroreversion.cc
src/stanExports_time_seroreversion.h
src/stanExports_time_log_no_seroreversion.cc
src/stanExports_age_no_seroreversion.h
src/stanExports_time_no_seroreversion.h
src/stanExports_time_seroreversion.cc
inst/WORDLIST
inst/include/stan_meta_header.hpp
inst/doc/serofoi.html
inst/doc/serofoi.R
inst/doc/serofoi.Rmd
inst/extdata/chik2015.RDS
inst/extdata/veev2012.RDS
inst/extdata/config.yml
inst/extdata/chagas2012.RDS
inst/stan/age_no_seroreversion.stan
inst/stan/time_seroreversion.stan
inst/stan/constant_seroreversion.stan
inst/stan/time_log_seroreversion.stan
inst/stan/age_seroreversion.stan
inst/stan/time_log_no_seroreversion.stan
inst/stan/time_no_seroreversion.stan
inst/stan/constant_no_seroreversion.stan
inst/stan/data/seroreversion_prior_data.stan
inst/stan/data/foi_prior_data.stan
inst/stan/data/basic_data.stan
inst/stan/functions/prob_infected_age.stan
inst/stan/functions/prob_infected_time.stan
inst/stan/functions/prob_infected_constant.stan
inst/stan/generated_quantities/log_likelihood.stan
build/vignette.rds
tests/testthat.R
tests/spelling.R
tests/testthat/test-validation.R
tests/testthat/test-get_foi_index.R
tests/testthat/test-build_stan_data.R
tests/testthat/test-fit_seromodel.R
tests/testthat/helper-plot-compare.R
tests/testthat/setup-options.R
tests/testthat/test-simulate_serosurvey.R
tests/testthat/test-plot_seromodel.R
tests/testthat/helper-state.R
tests/testthat/testdata/prepared_serodata_hmisc.RDS
vignettes/references.bib
vignettes/serofoi.Rmd
data/chagas2012.RData
data/chik2015.RData
data/veev2012.RData
tools/check.env
man/plot_rhats.Rd
man/set_foi_init.Rd
man/prob_seroprev_by_age.Rd
man/get_foi_index.Rd
man/prob_seroprev_age_time_by_age.Rd
man/prob_seroprev_gen_by_age.Rd
man/validate_survey_features.Rd
man/get_seroprev_counts_by_bin.Rd
man/add_age_group_to_serosurvey.Rd
man/summarise_seromodel.Rd
man/sf_cauchy.Rd
man/probability_exact_age_varying.Rd
man/serofoi-package.Rd
man/validate_foi_df.Rd
man/validate_serosurvey.Rd
man/extract_central_estimates.Rd
man/plot_summary.Rd
man/prob_seroprev_age_by_age.Rd
man/summarise_loo_estimate.Rd
man/simulate_serosurvey_time.Rd
man/check_age_constraints.Rd
man/sf_none.Rd
man/sf_uniform.Rd
man/plot_seroprev_estimates.Rd
man/sf_normal.Rd
man/simulate_serosurvey_general.Rd
man/validate_plot_constant.Rd
man/plot_serosurvey.Rd
man/plot_seromodel.Rd
man/fit_seromodel.Rd
man/validate_foi_index.Rd
man/validate_simulation_age_time.Rd
man/chagas2012.Rd
man/prepare_serosurvey_for_plot.Rd
man/probability_exact_time_varying.Rd
man/set_stan_data_defaults.Rd
man/build_stan_data.Rd
man/summarise_central_estimate.Rd
man/plot_foi_estimates.Rd
man/chik2015.Rd
man/validate_seroreversion_rate.Rd
man/veev2012.Rd
man/simulate_serosurvey_age_time.Rd
man/validate_simulation_age.Rd
man/prob_seroprev_time_by_age.Rd
man/simulate_serosurvey.Rd
man/simulate_serosurvey_age.Rd
man/figures/plot_seroprev_example.png
man/figures/plot_model_example.png
man/figures/logo.png
man/figures/plot_foi_example.png
man/figures/plot_rhats_example.png
man/figures/README-model_comp-1.png
man/figures/README-data_test-1.png
man/figures/plot_seroprev_fitted_example.png
man/figures/README-ex-1.png
man/figures/README-plot_model-1.png
man/figures/README-plot_seroprev_model-1.png
