plot_seroprev_estimates: Plot seroprevalence estimates on top of the serosurvey

In serofoi: Bayesian Estimation of the Force of Infection from Serological Data

Plot seroprevalence estimates on top of the serosurvey

Description

Plot seroprevalence estimates on top of the serosurvey

Usage

plot_seroprev_estimates(
  seromodel,
  serosurvey,
  alpha = 0.05,
  size_text = 11,
  bin_serosurvey = FALSE,
  bin_step = 5
)

Arguments

seromodel	stan_fit object obtained from sampling a model with fit_seromodel
serosurvey	survey_year Year in which the survey took place (only needed to plot time models) age_min Floor value of the average between age_min and age_max age_max The size of the sample n_sample Number of samples for each age group n_seropositive Number of positive samples for each age group
alpha	1 - alpha indicates the credibility level to be used
size_text	Size of text for plotting (base_size in ggplot2)
bin_serosurvey	If TRUE, serodata is binned by means of prepare_bin_serosurvey. Otherwise, age groups are kept as originally input.
bin_step	Integer specifying the age groups bin size to be used when bin_serosurvey is set to TRUE.

Value

ggplot object with seroprevalence estimates and serosurveys plots

Examples

data(veev2012)
seromodel <- fit_seromodel(veev2012, iter = 100)
plot_seroprev_estimates(seromodel, veev2012)

serofoi documentation built on April 3, 2025, 11:40 p.m.