prepare_serosurvey_for_plot: Prepares serosurvey for plotting

In serofoi: Bayesian Estimation of the Force of Infection from Serological Data

Prepares serosurvey for plotting

Description

Adds seroprevalence values with corresponding binomial confidence interval

Usage

prepare_serosurvey_for_plot(serosurvey, alpha = 0.05)

Arguments

serosurvey	survey_year Year in which the survey took place (only needed to plot time models) age_min Floor value of the average between age_min and age_max age_max The size of the sample n_sample Number of samples for each age group n_seropositive Number of positive samples for each age group
alpha	1 - alpha indicates the confidence level to be used

Value

serosurvey with additional columns:

seroprev

Seroprevalence computed as the proportion of positive cases n_seropositive in the number of samples n_sample for each age group

seroprev_lower

Lower limit of the binomial confidence interval of seroprev

seroprev_upper

Upper limit of the binomial confidence interval of seroprev

serofoi documentation built on April 3, 2025, 11:40 p.m.