plot_summary: Plots model summary

In serofoi: Bayesian Estimation of the Force of Infection from Serological Data

Plots model summary

Description

Plots model summary

Usage

plot_summary(
  seromodel,
  serosurvey,
  loo_estimate_digits = 1,
  central_estimate_digits = 2,
  rhat_digits = 2,
  size_text = 11,
  plot_constant = FALSE
)

Arguments

seromodel	stan_fit object obtained from sampling a model with fit_seromodel
serosurvey	survey_year Year in which the survey took place (only needed to plot time models) age_min Floor value of the average between age_min and age_max age_max The size of the sample n_sample Number of samples for each age group n_seropositive Number of positive samples for each age group
loo_estimate_digits	Number of loo estimate digits
central_estimate_digits	Number of central estimate digits
rhat_digits	Number of rhat estimate digits
size_text	Size of text for plotting (base_size in ggplot2)
plot_constant	boolean specifying whether to plot single Force-of-Infection estimate and its corresponding rhat value instead of showing this information in the summary. Only relevant when seromodel@model_name == "constant")

Value

ggplot object with a summary of the specified model

Examples

data(veev2012)
seromodel <- fit_seromodel(veev2012, iter = 100)
plot_summary(seromodel, veev2012)

serofoi documentation built on April 3, 2025, 11:40 p.m.