shapes: Statistical Shape Analysis

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Routines for the statistical analysis of landmark shapes, including Procrustes analysis, graphical displays, principal components analysis, permutation and bootstrap tests, thin-plate spline transformation grids and comparing covariance matrices.

Author
Ian L. Dryden
Date of publication
2016-07-06 14:56:49
Maintainer
Ian Dryden <ian.dryden@nottingham.ac.uk>
License
GPL-2
Version
1.1-13
URLs

View on CRAN

Man pages

apes
Great ape data
bookstein2d
Bookstein's baseline registration for 2D data
brains
Brain landmark data
centroid.size
Centroid size
cortical
Cortical surface data
digit3.dat
Digit 3 data
distcov
Compute a distance between two covariance matrices
dna.dat
DNA data
estcov
Weighted Frechet mean of covariance matrices
frechet
Mean shape estimators
gels
Electrophoresis gel data
gorf.dat
Female gorilla data
gorm.dat
Male gorilla data
groupstack
Combine two or more groups of configurations
humanmove
Human movement data
macaques
Male and Female macaque data
macf.dat
Female macaque data
macm.dat
Male macaque data
mice
T2 mouse vertabrae data
panf.dat
Female chimpanzee data
panm.dat
Male chimpanzee data
plotshapes
Plot configurations
pongof.dat
Female orang utan data
pongom.dat
Male orang utan data
procdist
Procrustes distance
procGPA
Generalised Procrustes analysis
procOPA
Ordinary Procrustes analysis
procWGPA
Weighted Procrustes analysis
qcet2.dat
Control T2 mouse vertabrae data
qlet2.dat
Large T2 mouse vertabrae data
qset2.dat
Small T2 mouse vertabrae data
rats
Rat skulls data
resampletest
Tests for mean shape difference using complex arithmetic,...
riemdist
Riemannian shape distance
rigidbody
Rigid body transformations
sand
Sand particle outline data
schizophrenia
Bookstein's schizophrenia data
schizophrenia.dat
Bookstein's schizophrenia data
shapepca
Principal components analysis for shape
shapes3d
Plot 3D data
shapes.cva
Canonical variate analysis for shapes
shapes-internal
Internal function(s)
shells
Microfossil shell data
sooty
Sooty mangabey data
ssriemdist
Riemannian size-and-shape distance
steroids
Steroid data
testmeanshapes
Tests for mean shape difference, including permutation and...
tpsgrid
Thin-plate spline transformation grids
transformations
Calculate similarity transformations

Files in this package

shapes
shapes/NAMESPACE
shapes/demo
shapes/demo/00Index
shapes/demo/shapes.R
shapes/INSTALL
shapes/data
shapes/data/rats.rda
shapes/data/qset2.dat.rda
shapes/data/protein.rda
shapes/data/sooty.rda
shapes/data/brains.rda
shapes/data/nsa.rda
shapes/data/apes.rda
shapes/data/schizophrenia.rda
shapes/data/macm.dat.rda
shapes/data/gorf.dat.rda
shapes/data/macaques.rda
shapes/data/sooty.dat.rda
shapes/data/schizophrenia.dat.rda
shapes/data/panf.dat.rda
shapes/data/sand.rda
shapes/data/macf.dat.rda
shapes/data/qcet2.dat.rda
shapes/data/digit3.dat.rda
shapes/data/dna.dat.rda
shapes/data/panm.dat.rda
shapes/data/steroids.rda
shapes/data/pongom.dat.rda
shapes/data/gorm.dat.rda
shapes/data/cortical.rda
shapes/data/mice.rda
shapes/data/gels.rda
shapes/data/pongof.dat.rda
shapes/data/qlet2.dat.rda
shapes/data/shells.rda
shapes/data/humanmove.rda
shapes/R
shapes/R/shapes.R
shapes/MD5
shapes/DESCRIPTION
shapes/man
shapes/man/qset2.dat.Rd
shapes/man/ssriemdist.Rd
shapes/man/steroids.Rd
shapes/man/estcov.Rd
shapes/man/gorm.dat.Rd
shapes/man/macf.dat.Rd
shapes/man/procWGPA.Rd
shapes/man/rats.Rd
shapes/man/shapepca.Rd
shapes/man/schizophrenia.Rd
shapes/man/procdist.Rd
shapes/man/qlet2.dat.Rd
shapes/man/frechet.Rd
shapes/man/qcet2.dat.Rd
shapes/man/shapes-internal.Rd
shapes/man/gorf.dat.Rd
shapes/man/gels.Rd
shapes/man/mice.Rd
shapes/man/testmeanshapes.Rd
shapes/man/sand.Rd
shapes/man/resampletest.Rd
shapes/man/humanmove.Rd
shapes/man/procGPA.Rd
shapes/man/schizophrenia.dat.Rd
shapes/man/shapes3d.Rd
shapes/man/pongof.dat.Rd
shapes/man/apes.Rd
shapes/man/centroid.size.Rd
shapes/man/shells.Rd
shapes/man/cortical.Rd
shapes/man/plotshapes.Rd
shapes/man/procOPA.Rd
shapes/man/shapes.cva.Rd
shapes/man/macaques.Rd
shapes/man/pongom.dat.Rd
shapes/man/bookstein2d.Rd
shapes/man/panm.dat.Rd
shapes/man/transformations.Rd
shapes/man/digit3.dat.Rd
shapes/man/groupstack.Rd
shapes/man/brains.Rd
shapes/man/sooty.Rd
shapes/man/tpsgrid.Rd
shapes/man/distcov.Rd
shapes/man/riemdist.Rd
shapes/man/panf.dat.Rd
shapes/man/rigidbody.Rd
shapes/man/dna.dat.Rd
shapes/man/macm.dat.Rd