shapes: Statistical Shape Analysis

Routines for the statistical analysis of landmark shapes, including Procrustes analysis, graphical displays, principal components analysis, permutation and bootstrap tests, thin-plate spline transformation grids and comparing covariance matrices.

AuthorIan L. Dryden
Date of publication2016-07-06 14:56:49
MaintainerIan Dryden <ian.dryden@nottingham.ac.uk>
LicenseGPL-2
Version1.1-13
http://www.maths.nottingham.ac.uk/~ild/shapes

View on CRAN

Man pages

apes: Great ape data

bookstein2d: Bookstein's baseline registration for 2D data

brains: Brain landmark data

centroid.size: Centroid size

cortical: Cortical surface data

digit3.dat: Digit 3 data

distcov: Compute a distance between two covariance matrices

dna.dat: DNA data

estcov: Weighted Frechet mean of covariance matrices

frechet: Mean shape estimators

gels: Electrophoresis gel data

gorf.dat: Female gorilla data

gorm.dat: Male gorilla data

groupstack: Combine two or more groups of configurations

humanmove: Human movement data

macaques: Male and Female macaque data

macf.dat: Female macaque data

macm.dat: Male macaque data

mice: T2 mouse vertabrae data

panf.dat: Female chimpanzee data

panm.dat: Male chimpanzee data

plotshapes: Plot configurations

pongof.dat: Female orang utan data

pongom.dat: Male orang utan data

procdist: Procrustes distance

procGPA: Generalised Procrustes analysis

procOPA: Ordinary Procrustes analysis

procWGPA: Weighted Procrustes analysis

qcet2.dat: Control T2 mouse vertabrae data

qlet2.dat: Large T2 mouse vertabrae data

qset2.dat: Small T2 mouse vertabrae data

rats: Rat skulls data

resampletest: Tests for mean shape difference using complex arithmetic,...

riemdist: Riemannian shape distance

rigidbody: Rigid body transformations

sand: Sand particle outline data

schizophrenia: Bookstein's schizophrenia data

schizophrenia.dat: Bookstein's schizophrenia data

shapepca: Principal components analysis for shape

shapes3d: Plot 3D data

shapes.cva: Canonical variate analysis for shapes

shapes-internal: Internal function(s)

shells: Microfossil shell data

sooty: Sooty mangabey data

ssriemdist: Riemannian size-and-shape distance

steroids: Steroid data

testmeanshapes: Tests for mean shape difference, including permutation and...

tpsgrid: Thin-plate spline transformation grids

transformations: Calculate similarity transformations

Files in this package

shapes
shapes/NAMESPACE
shapes/demo
shapes/demo/00Index
shapes/demo/shapes.R
shapes/INSTALL
shapes/data
shapes/data/rats.rda
shapes/data/qset2.dat.rda
shapes/data/protein.rda
shapes/data/sooty.rda
shapes/data/brains.rda
shapes/data/nsa.rda
shapes/data/apes.rda
shapes/data/schizophrenia.rda
shapes/data/macm.dat.rda
shapes/data/gorf.dat.rda
shapes/data/macaques.rda
shapes/data/sooty.dat.rda
shapes/data/schizophrenia.dat.rda
shapes/data/panf.dat.rda
shapes/data/sand.rda
shapes/data/macf.dat.rda
shapes/data/qcet2.dat.rda
shapes/data/digit3.dat.rda
shapes/data/dna.dat.rda
shapes/data/panm.dat.rda
shapes/data/steroids.rda
shapes/data/pongom.dat.rda
shapes/data/gorm.dat.rda
shapes/data/cortical.rda
shapes/data/mice.rda
shapes/data/gels.rda
shapes/data/pongof.dat.rda
shapes/data/qlet2.dat.rda
shapes/data/shells.rda
shapes/data/humanmove.rda
shapes/R
shapes/R/shapes.R
shapes/MD5
shapes/DESCRIPTION
shapes/man
shapes/man/qset2.dat.Rd shapes/man/ssriemdist.Rd shapes/man/steroids.Rd shapes/man/estcov.Rd shapes/man/gorm.dat.Rd shapes/man/macf.dat.Rd shapes/man/procWGPA.Rd shapes/man/rats.Rd shapes/man/shapepca.Rd shapes/man/schizophrenia.Rd shapes/man/procdist.Rd shapes/man/qlet2.dat.Rd shapes/man/frechet.Rd shapes/man/qcet2.dat.Rd shapes/man/shapes-internal.Rd shapes/man/gorf.dat.Rd shapes/man/gels.Rd shapes/man/mice.Rd shapes/man/testmeanshapes.Rd shapes/man/sand.Rd shapes/man/resampletest.Rd shapes/man/humanmove.Rd shapes/man/procGPA.Rd shapes/man/schizophrenia.dat.Rd shapes/man/shapes3d.Rd shapes/man/pongof.dat.Rd shapes/man/apes.Rd shapes/man/centroid.size.Rd shapes/man/shells.Rd shapes/man/cortical.Rd shapes/man/plotshapes.Rd shapes/man/procOPA.Rd shapes/man/shapes.cva.Rd shapes/man/macaques.Rd shapes/man/pongom.dat.Rd shapes/man/bookstein2d.Rd shapes/man/panm.dat.Rd shapes/man/transformations.Rd shapes/man/digit3.dat.Rd shapes/man/groupstack.Rd shapes/man/brains.Rd shapes/man/sooty.Rd shapes/man/tpsgrid.Rd shapes/man/distcov.Rd shapes/man/riemdist.Rd shapes/man/panf.dat.Rd shapes/man/rigidbody.Rd shapes/man/dna.dat.Rd shapes/man/macm.dat.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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