shapes: Statistical Shape Analysis
Version 1.2.0

Routines for the statistical analysis of landmark shapes, including Procrustes analysis, graphical displays, principal components analysis, permutation and bootstrap tests, thin-plate spline transformation grids and comparing covariance matrices. see Dryden, I.L. and Mardia, K.V. (2016). Statistical shape analysis, with Applications in R (2nd Edition), Wiley.

Browse man pages Browse package API and functions Browse package files

AuthorIan L. Dryden
Date of publication2017-02-03 00:18:21
MaintainerIan Dryden <ian.dryden@nottingham.ac.uk>
LicenseGPL-2
Version1.2.0
URL http://www.maths.nottingham.ac.uk/~ild/shapes
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("shapes")

Man pages

apes: Great ape data
bookstein2d: Bookstein's baseline registration for 2D data
brains: Brain landmark data
centroid.size: Centroid size
cortical: Cortical surface data
digit3.dat: Digit 3 data
distcov: Compute a distance between two covariance matrices
dna.dat: DNA data
estcov: Weighted Frechet mean of covariance matrices
frechet: Mean shape estimators
gels: Electrophoresis gel data
gorf.dat: Female gorilla data
gorm.dat: Male gorilla data
groupstack: Combine two or more groups of configurations
humanmove: Human movement data
macaques: Male and Female macaque data
macf.dat: Female macaque data
macm.dat: Male macaque data
mice: T2 mouse vertabrae data
panf.dat: Female chimpanzee data
panm.dat: Male chimpanzee data
plotshapes: Plot configurations
pongof.dat: Female orang utan data
pongom.dat: Male orang utan data
procdist: Procrustes distance
procGPA: Generalised Procrustes analysis
procOPA: Ordinary Procrustes analysis
procWGPA: Weighted Procrustes analysis
qcet2.dat: Control T2 mouse vertabrae data
qlet2.dat: Large T2 mouse vertabrae data
qset2.dat: Small T2 mouse vertabrae data
rats: Rat skulls data
resampletest: Tests for mean shape difference using complex arithmetic,...
riemdist: Riemannian shape distance
rigidbody: Rigid body transformations
sand: Sand particle outline data
schizophrenia: Bookstein's schizophrenia data
schizophrenia.dat: Bookstein's schizophrenia data
shapepca: Principal components analysis for shape
shapes3d: Plot 3D data
shapes.cva: Canonical variate analysis for shapes
shapes-internal: Internal function(s)
shells: Microfossil shell data
sooty: Sooty mangabey data
ssriemdist: Riemannian size-and-shape distance
steroids: Steroid data
testmeanshapes: Tests for mean shape difference, including permutation and...
tpsgrid: Thin-plate spline transformation grids
transformations: Calculate similarity transformations

Functions

BoxM Man page Source code
Enorm Man page Source code
Goodall Man page Source code
Goodall2D Man page Source code
Goodalltest Man page Source code
Hessian2 Man page Source code
Hotelling Man page Source code
Hotelling2D Man page Source code
Hotelling2Djames Man page Source code
Hotellingtest Man page Source code
I2mat Man page Source code
James Man page Source code
Lambdamin Man page Source code
MDSshape Man page Source code
MGM Man page Source code
TPSgrid Man page
V Man page Source code
Vinv Man page Source code
Vmat Man page Source code
abind Man page Source code
add Man page Source code
apes Man page
as.3d Man page Source code
banner1 Man page Source code
banner4 Man page Source code
bendingenergy Man page Source code
bgpa Man page Source code
bookstein.shpv Man page Source code
bookstein.shpv.complex Man page Source code
bookstein2d Man page Source code
bootstraptest Man page Source code
braincon.dat Man page
brains Man page
brainscz.dat Man page
cbevec Man page Source code
cbevectors Man page Source code
centroid.size Man page Source code
centroid.size.complex Man page Source code
centroid.size.mD Man page Source code
close1 Man page Source code
cnt3 Man page Source code
complextoreal Man page Source code
cortical Man page
defh Man page Source code
defplotsize2 Man page Source code
defplotsize3 Man page Source code
del Man page Source code
dif Man page Source code
dif.old Man page Source code
digit3.dat Man page
dis Man page Source code
distCholesky Man page Source code
distEuclidean Man page Source code
distLogEuclidean Man page Source code
distPowerEuclidean Man page Source code
distProcrustesFull Man page Source code
distProcrustesSizeShape Man page Source code
distRiemPennec Man page Source code
distRiemannianLe Man page Source code
distcov Man page Source code
dna.dat Man page
estChol Man page
estCholesky Man page Source code
estEuclid Man page Source code
estLogEuclid Man page Source code
estLogRiem2 Man page Source code
estPowerEuclid Man page Source code
estRiemLe Man page Source code
estSS Man page Source code
estShape Man page Source code
estShapes Man page
estcov Man page Source code
fJ Man page Source code
fcel Man page Source code
fcnt Man page Source code
fgpa Man page Source code
fgpa.rot Man page Source code
fgpa.singleiteration Man page Source code
fopa Man page Source code
fort Man page
fort.ROTATEANDREFLECT Man page Source code
fort.ROTATION Man page Source code
fos Man page Source code
fos.REFLECT Man page Source code
frechet Man page Source code
ftrsq Man page Source code
full.procdist Man page Source code
gels Man page
genpower Man page Source code
goodall2d Man page
goodalltest Man page
gorf.dat Man page
gorm.dat Man page
graf Man page Source code
groupstack Man page Source code
hotelling2d Man page
hotellingtest Man page
humanmove Man page
iglogl Man page Source code
isodens Man page Source code
isologdens Man page Source code
isomle Man page Source code
isotropy.test Man page Source code
kendall.shpv Man page Source code
linegrid Man page Source code
loglikeiso Man page Source code
loglikeiso2 Man page Source code
loneFone Man page Source code
macaques Man page
macf.dat Man page
macm.dat Man page
mahpreshapedist Man page Source code
makearray Man page Source code
mice Man page
movie Man page Source code
msh Man page Source code
norm Man page
nsa Man page
objfun Man page Source code
objfun4 Man page Source code
objfuniso Man page Source code
oneFone Man page Source code
panf.dat Man page
panm.dat Man page
partial.procdist Man page Source code
partialwarpgrids Man page Source code
partialwarps Man page Source code
permutationtest Man page Source code
permutationtest2 Man page Source code
plot2rwscores Man page Source code
plot3Ddata Man page Source code
plot3Ddata.static Man page Source code
plot3Dmean Man page Source code
plot3Dpca Man page Source code
plotPDM Man page Source code
plotPDM2 Man page Source code
plotPDM3 Man page Source code
plotPDMbook Man page Source code
plotPDMnoaxis Man page Source code
plotPDMnoaxis3 Man page Source code
plotpairscores Man page Source code
plotpca Man page Source code
plotpca3d Man page Source code
plotprinwarp Man page Source code
plotproc Man page Source code
plotrelwarp Man page Source code
plotshapes Man page Source code
plotshapes3d Man page Source code
plotshapestime3d Man page Source code
pointsPDMnoaxis3 Man page Source code
pongof.dat Man page
pongom.dat Man page
prcomp1 Man page Source code
preshape Man page Source code
preshape.mD Man page Source code
preshape.mat Man page Source code
preshapetoicon Man page Source code
prinwscoregrids Man page Source code
procGPA Man page Source code
procOPA Man page Source code
procWGPA Man page Source code
procWGPA1 Man page Source code
procdist Man page Source code
procdistreflect Man page Source code
procrustes2d Man page Source code
procrustesGPA Man page Source code
procrustesGPA.rot Man page Source code
procrustesgpa Man page
project Man page Source code
protein Man page
qcet2.dat Man page
qlet2.dat Man page
qset2.dat Man page
rats Man page
read.array Man page Source code
read.in Man page Source code
realtocomplex Man page Source code
reassqpr Man page Source code
relwarps Man page Source code
resampletest Man page Source code
rgpa Man page Source code
riemdist Man page Source code
riemdist.complex Man page Source code
riemdist.mD Man page Source code
rigidbody Man page Source code
rootmat Man page Source code
rotateaxes Man page Source code
rotatexyz Man page Source code
sand Man page
schizo.dat Man page
schizophrenia Man page
schizophrenia.dat Man page
select Man page
sgpa Man page Source code
sh Man page Source code
shapepca Man page Source code
shaperw Man page Source code
shapes.cva Man page Source code
shapes3d Man page Source code
shells Man page
sigma Man page Source code
sim1 Man page Source code
sooty Man page
sooty.dat Man page
ssriemdist Man page Source code
st Man page Source code
steroids Man page
tanfigure Man page Source code
tanfigurefull Man page Source code
tanpreshape Man page Source code
tantofigure Man page Source code
tantofigurefull Man page Source code
tantopreshape Man page Source code
testmeanshapes Man page Source code
testmeanshapes.old Man page Source code
testshapes Man page Source code
tpsgrid Man page Source code
tpsgrid.old Man page Source code
transformations Man page Source code
vec1 Man page Source code

Files

NAMESPACE
demo
demo/00Index
demo/shapes.R
INSTALL
data
data/rats.rda
data/qset2.dat.rda
data/protein.rda
data/sooty.rda
data/brains.rda
data/nsa.rda
data/apes.rda
data/schizophrenia.rda
data/macm.dat.rda
data/gorf.dat.rda
data/macaques.rda
data/sooty.dat.rda
data/schizophrenia.dat.rda
data/panf.dat.rda
data/sand.rda
data/macf.dat.rda
data/qcet2.dat.rda
data/digit3.dat.rda
data/dna.dat.rda
data/panm.dat.rda
data/steroids.rda
data/pongom.dat.rda
data/gorm.dat.rda
data/cortical.rda
data/mice.rda
data/gels.rda
data/pongof.dat.rda
data/qlet2.dat.rda
data/shells.rda
data/humanmove.rda
R
R/shapes.R
MD5
DESCRIPTION
man
man/qset2.dat.Rd
man/ssriemdist.Rd
man/steroids.Rd
man/estcov.Rd
man/gorm.dat.Rd
man/macf.dat.Rd
man/procWGPA.Rd
man/rats.Rd
man/shapepca.Rd
man/schizophrenia.Rd
man/procdist.Rd
man/qlet2.dat.Rd
man/frechet.Rd
man/qcet2.dat.Rd
man/shapes-internal.Rd
man/gorf.dat.Rd
man/gels.Rd
man/mice.Rd
man/testmeanshapes.Rd
man/sand.Rd
man/resampletest.Rd
man/humanmove.Rd
man/procGPA.Rd
man/schizophrenia.dat.Rd
man/shapes3d.Rd
man/pongof.dat.Rd
man/apes.Rd
man/centroid.size.Rd
man/shells.Rd
man/cortical.Rd
man/plotshapes.Rd
man/procOPA.Rd
man/shapes.cva.Rd
man/macaques.Rd
man/pongom.dat.Rd
man/bookstein2d.Rd
man/panm.dat.Rd
man/transformations.Rd
man/digit3.dat.Rd
man/groupstack.Rd
man/brains.Rd
man/sooty.Rd
man/tpsgrid.Rd
man/distcov.Rd
man/riemdist.Rd
man/panf.dat.Rd
man/rigidbody.Rd
man/dna.dat.Rd
man/macm.dat.Rd
shapes documentation built on May 29, 2017, 12:58 p.m.