show_sig_profile_loop: Show Signature Profile with Loop Way

In sigminer: Extract, Analyze and Visualize Mutational Signatures for Genomic Variations

Show Signature Profile with Loop Way

Description

Show Signature Profile with Loop Way

Usage

show_sig_profile_loop(
  Signature,
  sig_names = NULL,
  ncol = 1,
  nrow = NULL,
  x_lab = "Components",
  ...
)

Arguments

Signature	a Signature object obtained either from sig_extract or sig_auto_extract, or just a raw signature matrix with row representing components (motifs) and column representing signatures (column names must start with 'Sig').
sig_names	subset signatures or set name of signatures, can be a character vector. Default is NULL, prefix 'Sig' plus number is used.
ncol	(optional) Number of columns in the plot grid.
nrow	(optional) Number of rows in the plot grid.
x_lab	x axis lab.
...	other parameters but sig_order passing to show_sig_profile.

Value

a ggplot result from cowplot::plot_grid().

See Also

show_sig_profile

Examples

load(system.file("extdata", "toy_mutational_signature.RData",
  package = "sigminer", mustWork = TRUE
))
# Show signature profile
p1 <- show_sig_profile_loop(sig2, mode = "SBS")
p1
p2 <- show_sig_profile_loop(sig2, mode = "SBS", style = "cosmic", sig_names = c("A", "B", "C"))
p2

sigminer documentation built on Aug. 21, 2023, 9:08 a.m.