simulated_catalogs: A List of Simulated SBS-96 Catalog Matrix

In sigminer: Extract, Analyze and Visualize Mutational Signatures for Genomic Variations

A List of Simulated SBS-96 Catalog Matrix

Description

Data from \Sexpr[results=rd]{tools:::Rd_expr_doi("10.1038/s43018-020-0027-5")}. 5 simulated mutation catalogs are used by the paper but only 4 are available. The data are simulated from COSMIC mutational signatures 1, 2, 3, 5, 6, 8, 12, 13, 17 and 18. Each sample is a linear combination of 5 randomly selected signatures with the addiction of Poisson noise. The number of mutation in each sample is randomly selected between 1,000 and 50,000 mutations, in log scale so that a lower number of mutations is more likely to be selected. The proportion of each signature in each sample is also random.

Format

A list of matrix

Source

Generate from code under data_raw/

Examples

data(simulated_catalogs)

sigminer documentation built on May 29, 2024, 3:11 a.m.