simer.Data.Bfile2MVP: simer.Data.Bfile2MVP: To transform plink binary data to MVP...

In simer: Data Simulation for Life Science and Breeding

simer.Data.Bfile2MVP: To transform plink binary data to MVP package

Description

transforming plink binary data to MVP package.

Usage

simer.Data.Bfile2MVP(
  bfile,
  out = "simer",
  maxLine = 10000,
  type.geno = "char",
  threads = 10,
  verbose = TRUE
)

Arguments

bfile	Genotype in binary format (.bed, .bim, .fam).
out	the name of output file.
maxLine	the max number of line to write to big matrix for each loop.
type.geno	the type of genotype elements.
threads	number of thread for transforming.
verbose	whether to print the reminder.

Details

Build date: Sep 12, 2018 Last update: Dec 28, 2024

Value

number of individuals and markers. Output files: genotype.desc, genotype.bin: genotype file in bigmemory format phenotype.phe: ordered phenotype file, same taxa order with genotype file map.map: SNP information

Author(s)

Haohao Zhang and Dong Yin

Examples

# Get bfile path
bfilePath <- file.path(system.file("extdata", "02plinkb", package = "simer"), "demo")

# Data converting
simer.Data.Bfile2MVP(bfilePath, tempfile("outfile"))

simer documentation built on April 3, 2025, 9:24 p.m.