simer.Data.MVP2MVP: Genotype data conversion

In simer: Data Simulation for Life Science and Breeding

Genotype data conversion

Description

Convert genotype data from MVP format to MVP format.

Usage

simer.Data.MVP2MVP(fileMVP, genoType = "char", out = "simer", verbose = TRUE)

Arguments

fileMVP	the prefix of MVP file.
genoType	type parameter in bigmemory data. The default is 'char', it is highly recommended *NOT* to modify this parameter.
out	the prefix of output files.
verbose	whether to print detail.

Details

Build date: May 26, 2021 Last update: Apr 28, 2022

Value

the function returns files

<out>.geno.desc

the description file of genotype data.

<out>.geno.bin

the binary file of genotype data.

<out>.geno.ind

the genotyped individual file.

<out>.geno.map

the marker information data file.

Author(s)

Dong Yin

Examples

# Get the prefix of genotype data
fileMVP <- system.file("extdata", "01bigmemory", "demo", package = "simer")

# Convert genotype data from MVP to MVP
simer.Data.MVP2MVP(fileMVP, out = tempfile("outfile"))

simer documentation built on April 3, 2025, 9:24 p.m.